DI_clusters.cxx File Reference

#include "di_clusters.hxx"
#include "di_clustertree.hxx"
#include "di_foundclusters.hxx"
#include "di_awars.hxx"
#include <AP_seq_protein.hxx>
#include <AP_seq_dna.hxx>
#include <awt_sel_boxes.hxx>
#include <aw_awars.hxx>
#include <aw_msg.hxx>
#include <arb_progress.h>
#include <arb_msg_nospam.h>
#include <aw_root.hxx>
#include <list>

Include dependency graph for DI_clusters.cxx:

Go to the source code of this file.

Classes
class	FINAL_TYPE< SEQTYPE >
	xml element More...
class	FINAL_TYPE< SEQTYPE >
	xml element More...
struct	GroupChanges
class	GroupBuilder
class	HasntCurrentClusterPrefix
class	UseTreeRoot

Macros
#define	di_assert(cond)   arb_assert(cond)
#define	AWAR_CLUSTER_PREFIX   AWAR_DIST_PREFIX "cluster/"
#define	AWAR_CLUSTER_PREFIX_TEMP   "/tmp/" AWAR_DIST_PREFIX
#define	AWAR_CLUSTER_MAXDIST   AWAR_CLUSTER_PREFIX "maxdist"
#define	AWAR_CLUSTER_MINSIZE   AWAR_CLUSTER_PREFIX "minsize"
#define	AWAR_CLUSTER_AUTOMARK   AWAR_CLUSTER_PREFIX "automark"
#define	AWAR_CLUSTER_MARKREP   AWAR_CLUSTER_PREFIX "markrep"
#define	AWAR_CLUSTER_SELECTREP   AWAR_CLUSTER_PREFIX "selrep"
#define	AWAR_CLUSTER_ORDER   AWAR_CLUSTER_PREFIX "order"
#define	AWAR_CLUSTER_GRP_PREFIX   AWAR_CLUSTER_PREFIX "group/"
#define	AWAR_CLUSTER_GRP_PREFIX_TMP   "/tmp/" AWAR_CLUSTER_GRP_PREFIX
#define	AWAR_CLUSTER_GROUP_WHAT   AWAR_CLUSTER_GRP_PREFIX "all"
#define	AWAR_CLUSTER_GROUP_EXISTING   AWAR_CLUSTER_GRP_PREFIX "existing"
#define	AWAR_CLUSTER_GROUP_NOTFOUND   AWAR_CLUSTER_GRP_PREFIX "notfound"
#define	AWAR_CLUSTER_GROUP_IDENTITY   AWAR_CLUSTER_GRP_PREFIX "identity"
#define	AWAR_CLUSTER_GROUP_PREFIX   AWAR_CLUSTER_GRP_PREFIX "prefix"
#define	AWAR_CLUSTER_GROUP_PREFIX_MATCH   AWAR_CLUSTER_GRP_PREFIX "prefix_match"
#define	AWAR_CLUSTER_GROUP_SUFFIX   AWAR_CLUSTER_GRP_PREFIX "suffix"
#define	AWAR_CLUSTER_GROUP_PARTSEP   AWAR_CLUSTER_GRP_PREFIX "separator"
#define	AWAR_CLUSTER_GROUP_EXAMPLE   AWAR_CLUSTER_GRP_PREFIX_TMP "example"
#define	AWAR_CLUSTER_SELECTED   AWAR_CLUSTER_PREFIX_TEMP "selected"
#define	AWAR_CLUSTER_RESTORE_LABEL   AWAR_CLUSTER_PREFIX_TEMP "rlabel"

Typedefs
typedef map< string, GroupTree * >	Species2Tip

Enumerations
enum	Group_What { GROUP_SELECTED, GROUP_LISTED }
enum	Group_Action { GROUP_CREATE, GROUP_DELETE }
enum	Group_NotFound { NOTFOUND_ABORT, NOTFOUND_WARN, NOTFOUND_IGNORE }
enum	Group_Existing { EXISTING_GROUP_ABORT, EXISTING_GROUP_SKIP, EXISTING_GROUP_OVERWRITE, EXISTING_GROUP_APPEND_ORG }
enum	AffectedClusters { ALL_CLUSTERS, SEL_CLUSTER }

Functions
static void	di_forget_global_data (AW_window *)
static void	update_cluster_sellist ()
static void	update_restore_label (AW_window *aww)
static void	update_all (AW_window *aww)
static void	save_results_recursive (ClusterTree *subtree)
static void	save_results (ClusterTreeRoot *tree)
static void	calculate_clusters (AW_window *aww)
	DECLARE_CBTYPE_FVV_AND_BUILDERS (ClusterCallback, void, ClusterPtr)
bool	is_cluster (ID id)
static int	with_affected_clusters_do (AW_root *aw_root, AffectedClusters affected, bool warn_if_none_affected, ClusterCallback cb)
static void	mark_cluster (ClusterPtr cluster, ClusterMarkMode markRep)
static void	select_representative (ClusterPtr cluster)
static void	mark_clusters (AW_window *, AffectedClusters affected, bool warn_if_none_affected)
static void	select_cluster_cb (AW_root *aw_root)
static void	select_cluster (ID id)
static void	sort_order_changed_cb (AW_root *aw_root)
string	concatenate_name_parts (const list< string > &namepart, const string &separator)
static void	update_example (AW_root *aw_root)
static void	update_cluster_group (ClusterPtr cluster, GroupBuilder *groupBuilder)
static void	accept_proposed_names (ClusterPtr cluster, bool accept)
static void	group_clusters (AW_window *, Group_Action action)
static void	popup_group_clusters_window (AW_window *aw_clusterList)
static void	delete_selected_cluster (ClusterPtr cluster)
static void	delete_clusters (AW_window *aww, AffectedClusters affected)
static void	store_selected_cluster (ClusterPtr cluster)
static void	store_clusters (AW_window *aww, AffectedClusters affected)
static void	restore_clusters (AW_window *aww)
static void	swap_clusters (AW_window *aww)
AW_window *	DI_create_cluster_detection_window (AW_root *aw_root, WeightedFilter *weightedFilter)
void	DI_create_cluster_awars (AW_root *aw_root, AW_default def, AW_default db)

Variables
static ClustersData *	global_data = NULp

Macro Definition Documentation

#define di_assert

(

cond

)

arb_assert(cond)

Definition at line 32 of file DI_clusters.cxx.

Referenced by DI_MATRIX::calculate(), DI_MATRIX::calculate_pro(), DI_MATRIX::detect_transformation(), di_calculate_matrix(), di_calculate_tree_cb(), di_forget_global_data(), di_mark_by_distance(), di_recalc_matrix(), di_view_set_distances(), GroupBuilder::find_best_matching_subtree(), gc_changed_cb(), get_load_count(), init(), di_protdist::makedists(), GroupBuilder::save_modified_tree(), FINAL_TYPE< SEQTYPE >::tag_leaf(), and update_cb().

#define AWAR_CLUSTER_PREFIX   AWAR_DIST_PREFIX "cluster/"

Definition at line 37 of file DI_clusters.cxx.

#define AWAR_CLUSTER_PREFIX_TEMP   "/tmp/" AWAR_DIST_PREFIX

Definition at line 38 of file DI_clusters.cxx.

#define AWAR_CLUSTER_MAXDIST   AWAR_CLUSTER_PREFIX "maxdist"

Definition at line 40 of file DI_clusters.cxx.

Referenced by calculate_clusters(), DI_create_cluster_awars(), DI_create_cluster_detection_window(), and GroupBuilder::GroupBuilder().

#define AWAR_CLUSTER_MINSIZE   AWAR_CLUSTER_PREFIX "minsize"

Definition at line 41 of file DI_clusters.cxx.

Referenced by calculate_clusters(), DI_create_cluster_awars(), and DI_create_cluster_detection_window().

#define AWAR_CLUSTER_AUTOMARK   AWAR_CLUSTER_PREFIX "automark"

Definition at line 42 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), DI_create_cluster_detection_window(), and select_cluster_cb().

#define AWAR_CLUSTER_MARKREP   AWAR_CLUSTER_PREFIX "markrep"

Definition at line 43 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), DI_create_cluster_detection_window(), and mark_clusters().

#define AWAR_CLUSTER_SELECTREP   AWAR_CLUSTER_PREFIX "selrep"

Definition at line 44 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), DI_create_cluster_detection_window(), and select_cluster_cb().

#define AWAR_CLUSTER_ORDER   AWAR_CLUSTER_PREFIX "order"

Definition at line 45 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), DI_create_cluster_detection_window(), and sort_order_changed_cb().

#define AWAR_CLUSTER_GRP_PREFIX   AWAR_CLUSTER_PREFIX "group/"

Definition at line 47 of file DI_clusters.cxx.

#define AWAR_CLUSTER_GRP_PREFIX_TMP   "/tmp/" AWAR_CLUSTER_GRP_PREFIX

Definition at line 48 of file DI_clusters.cxx.

#define AWAR_CLUSTER_GROUP_WHAT   AWAR_CLUSTER_GRP_PREFIX "all"

Definition at line 50 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), group_clusters(), and popup_group_clusters_window().

#define AWAR_CLUSTER_GROUP_EXISTING   AWAR_CLUSTER_GRP_PREFIX "existing"

Definition at line 51 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), GroupBuilder::GroupBuilder(), and popup_group_clusters_window().

#define AWAR_CLUSTER_GROUP_NOTFOUND   AWAR_CLUSTER_GRP_PREFIX "notfound"

Definition at line 52 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), GroupBuilder::GroupBuilder(), and popup_group_clusters_window().

#define AWAR_CLUSTER_GROUP_IDENTITY   AWAR_CLUSTER_GRP_PREFIX "identity"

Definition at line 53 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), GroupBuilder::GroupBuilder(), and popup_group_clusters_window().

#define AWAR_CLUSTER_GROUP_PREFIX   AWAR_CLUSTER_GRP_PREFIX "prefix"

Definition at line 54 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), GroupBuilder::GroupBuilder(), and popup_group_clusters_window().

#define AWAR_CLUSTER_GROUP_PREFIX_MATCH   AWAR_CLUSTER_GRP_PREFIX "prefix_match"

Definition at line 55 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), GroupBuilder::GroupBuilder(), and popup_group_clusters_window().

#define AWAR_CLUSTER_GROUP_SUFFIX   AWAR_CLUSTER_GRP_PREFIX "suffix"

Definition at line 56 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), GroupBuilder::GroupBuilder(), and popup_group_clusters_window().

#define AWAR_CLUSTER_GROUP_PARTSEP   AWAR_CLUSTER_GRP_PREFIX "separator"

Definition at line 57 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), GroupBuilder::GroupBuilder(), and popup_group_clusters_window().

#define AWAR_CLUSTER_GROUP_EXAMPLE   AWAR_CLUSTER_GRP_PREFIX_TMP "example"

Definition at line 58 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), popup_group_clusters_window(), and update_example().

#define AWAR_CLUSTER_SELECTED   AWAR_CLUSTER_PREFIX_TEMP "selected"

Definition at line 60 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), DI_create_cluster_detection_window(), select_cluster(), update_example(), and with_affected_clusters_do().

#define AWAR_CLUSTER_RESTORE_LABEL   AWAR_CLUSTER_PREFIX_TEMP "rlabel"

Definition at line 61 of file DI_clusters.cxx.

Referenced by DI_create_cluster_awars(), DI_create_cluster_detection_window(), and update_restore_label().

Typedef Documentation

typedef map<string, GroupTree*> Species2Tip

Definition at line 301 of file DI_clusters.cxx.

Enumeration Type Documentation

enum Group_What

Enumerator
GROUP_SELECTED
GROUP_LISTED

Definition at line 63 of file DI_clusters.cxx.

enum Group_Action

Enumerator
GROUP_CREATE
GROUP_DELETE

Definition at line 68 of file DI_clusters.cxx.

enum Group_NotFound

Enumerator
NOTFOUND_ABORT
NOTFOUND_WARN
NOTFOUND_IGNORE

Definition at line 73 of file DI_clusters.cxx.

enum Group_Existing

Enumerator
EXISTING_GROUP_ABORT
EXISTING_GROUP_SKIP
EXISTING_GROUP_OVERWRITE
EXISTING_GROUP_APPEND_ORG

Definition at line 79 of file DI_clusters.cxx.

enum AffectedClusters

Enumerator
ALL_CLUSTERS
SEL_CLUSTER

Definition at line 88 of file DI_clusters.cxx.

Function Documentation

static void di_forget_global_data ( AW_window *  )

static

Definition at line 94 of file DI_clusters.cxx.

References di_assert, and ClustersData::free().

Referenced by DI_create_cluster_detection_window().

static void update_cluster_sellist ( )

static

Definition at line 103 of file DI_clusters.cxx.

References ClustersData::update_cluster_selection_list().

Referenced by delete_clusters(), DI_create_cluster_detection_window(), save_results(), sort_order_changed_cb(), and update_all().

static void update_restore_label ( AW_window *  aww )

static

Definition at line 107 of file DI_clusters.cxx.

References AW_root::awar(), AWAR_CLUSTER_RESTORE_LABEL, ClustersData::count(), GBS_global_string(), AW_window::get_root(), label, STORED_CLUSTERS, and AW_awar::write_string().

Referenced by update_all().

static void update_all ( AW_window *  aww )

static

Definition at line 115 of file DI_clusters.cxx.

References update_cluster_sellist(), and update_restore_label().

Referenced by restore_clusters(), store_clusters(), and swap_clusters().

static void save_results_recursive ( ClusterTree *  subtree )

static

Definition at line 120 of file DI_clusters.cxx.

References ClustersData::add(), CS_IS_CLUSTER, and SHOWN_CLUSTERS.

Referenced by save_results().

static void save_results ( ClusterTreeRoot *  tree )

static

Definition at line 129 of file DI_clusters.cxx.

References ClustersData::clear(), save_results_recursive(), SHOWN_CLUSTERS, and update_cluster_sellist().

Referenced by calculate_clusters().

static void calculate_clusters ( AW_window *  aww )

static

Definition at line 135 of file DI_clusters.cxx.

References aw_message(), AW_root::awar(), AWAR_CLUSTER_MAXDIST, AWAR_CLUSTER_MINSIZE, AWAR_DIST_ALIGNMENT, AWAR_DIST_TREE_CURR_NAME, WeightedFilter::create_aliview(), error(), gb_main, GBT_is_alignment_protein(), ClustersData::get_gb_main(), AW_window::get_root(), NULp, AW_awar::read_float(), AW_awar::read_int(), AW_awar::read_string(), save_results(), seq, arb_progress::subtitle(), ta, tree, and ClustersData::weighted_filter.

Referenced by DI_create_cluster_detection_window().

DECLARE_CBTYPE_FVV_AND_BUILDERS	(	ClusterCallback	,
		void	,
		ClusterPtr
	)

bool is_cluster ( ID  id )

inline

Definition at line 190 of file DI_clusters.cxx.

Referenced by update_example(), and with_affected_clusters_do().

static int with_affected_clusters_do ( AW_root *  aw_root, AffectedClusters  affected, bool  warn_if_none_affected, ClusterCallback  cb  )

static

Definition at line 195 of file DI_clusters.cxx.

References aw_message(), AW_root::awar(), AWAR_CLUSTER_SELECTED, cb, cl_assert, ClustersData::clusterWithID(), ClustersData::count(), ClustersData::get_clusterIDs(), is_cluster(), SmartPtr< T, C >::isNull(), AW_awar::read_int(), SEL_CLUSTER, and SHOWN_CLUSTERS.

Referenced by delete_clusters(), group_clusters(), mark_clusters(), select_cluster_cb(), and store_clusters().

static void mark_cluster ( ClusterPtr  cluster, ClusterMarkMode  markRep  )

static

Definition at line 249 of file DI_clusters.cxx.

References Cluster::mark_all_members().

Referenced by mark_clusters().

static void select_representative ( ClusterPtr  cluster )

static

Definition at line 252 of file DI_clusters.cxx.

References AW_root::awar(), AWAR_SPECIES_NAME, GBT_get_name(), ClustersData::get_aw_root(), Cluster::get_representative(), ta, and AW_awar::write_string().

Referenced by select_cluster_cb().

static void mark_clusters ( AW_window *  , AffectedClusters  affected, bool  warn_if_none_affected  )

static

Definition at line 258 of file DI_clusters.cxx.

References AW_root::awar(), AWAR_CLUSTER_MARKREP, AWAR_TREE_REFRESH, gb_main, GBT_mark_all(), ClustersData::get_aw_root(), ClustersData::get_gb_main(), mark_cluster(), AW_awar::read_int(), ta, AW_awar::touch(), and with_affected_clusters_do().

Referenced by DI_create_cluster_detection_window(), and select_cluster_cb().

static void select_cluster_cb ( AW_root *  aw_root )

static

Definition at line 270 of file DI_clusters.cxx.

References AW_root::awar(), AWAR_CLUSTER_AUTOMARK, AWAR_CLUSTER_SELECTREP, AWAR_SPECIES_NAME, ClustersData::get_gb_main(), mark_clusters(), NULp, AW_awar::read_int(), SEL_CLUSTER, select_representative(), ta, with_affected_clusters_do(), and AW_awar::write_string().

Referenced by DI_create_cluster_detection_window().

static void select_cluster ( ID  id )

static

Definition at line 283 of file DI_clusters.cxx.

References AW_root::awar(), AWAR_CLUSTER_SELECTED, ClustersData::get_aw_root(), and AW_awar::write_int().

Referenced by delete_clusters(), delete_selected_cluster(), group_clusters(), store_clusters(), store_selected_cluster(), and swap_clusters().

static void sort_order_changed_cb ( AW_root *  aw_root )

static

Definition at line 292 of file DI_clusters.cxx.

References AW_root::awar(), AWAR_CLUSTER_ORDER, ClustersData::changeSortOrder(), AW_awar::read_int(), and update_cluster_sellist().

Referenced by DI_create_cluster_detection_window().

string concatenate_name_parts	(	const list< string > &	namepart,
		const string &	separator
	)

Definition at line 549 of file DI_clusters.cxx.

References concat().

Referenced by GroupBuilder::generate_group_name().

static void update_example ( AW_root *  aw_root )

static

Definition at line 756 of file DI_clusters.cxx.

References AW_root::awar(), AWAR_CLUSTER_GROUP_EXAMPLE, AWAR_CLUSTER_SELECTED, cl_assert, ClustersData::clusterWithID(), error(), GroupBuilder::find_best_matching_subtree(), GBS_global_string(), ClustersData::get_gb_main(), GROUP_CREATE, is_cluster(), SmartPtr< T, C >::isNull(), AW_awar::read_int(), and AW_awar::write_string().

Referenced by DI_create_cluster_awars().

static void update_cluster_group ( ClusterPtr  cluster, GroupBuilder *  groupBuilder  )

static

Definition at line 777 of file DI_clusters.cxx.

References GroupBuilder::get_error(), and GroupBuilder::update_group().

Referenced by group_clusters().

static void accept_proposed_names ( ClusterPtr  cluster, bool  accept  )

static

Definition at line 783 of file DI_clusters.cxx.

References Cluster::accept_proposed().

Referenced by group_clusters().

static void group_clusters ( AW_window *  , Group_Action  action  )

static

Definition at line 787 of file DI_clusters.cxx.

References accept_proposed_names(), ALL_CLUSTERS, aw_message(), aw_message_if(), AW_root::awar(), AWAR_CLUSTER_GROUP_WHAT, GB_transaction::close(), error(), ClustersData::get_aw_root(), ClustersData::get_gb_main(), Cluster::get_ID(), GROUP_LISTED, SmartPtr< T, C >::isNull(), AW_awar::read_int(), SEL_CLUSTER, select_cluster(), ta, update_cluster_group(), ClustersData::update_cluster_selection_list(), and with_affected_clusters_do().

Referenced by popup_group_clusters_window().

static void popup_group_clusters_window ( AW_window *  aw_clusterList )

static

Definition at line 823 of file DI_clusters.cxx.

References AW_POPDOWN(), AWAR_CLUSTER_GROUP_EXAMPLE, AWAR_CLUSTER_GROUP_EXISTING, AWAR_CLUSTER_GROUP_IDENTITY, AWAR_CLUSTER_GROUP_NOTFOUND, AWAR_CLUSTER_GROUP_PARTSEP, AWAR_CLUSTER_GROUP_PREFIX, AWAR_CLUSTER_GROUP_PREFIX_MATCH, AWAR_CLUSTER_GROUP_SUFFIX, AWAR_CLUSTER_GROUP_WHAT, EXISTING_GROUP_ABORT, EXISTING_GROUP_APPEND_ORG, EXISTING_GROUP_OVERWRITE, EXISTING_GROUP_SKIP, AW_window::get_root(), group_clusters(), GROUP_CREATE, GROUP_DELETE, GROUP_LISTED, GROUP_SELECTED, makeHelpCallback(), NOTFOUND_ABORT, NOTFOUND_IGNORE, NOTFOUND_WARN, and NULp.

Referenced by DI_create_cluster_detection_window().

static void delete_selected_cluster ( ClusterPtr  cluster )

static

Definition at line 900 of file DI_clusters.cxx.

References ClustersData::idAtPos(), ClustersData::remove(), select_cluster(), and SHOWN_CLUSTERS.

Referenced by delete_clusters().

static void delete_clusters ( AW_window *  aww, AffectedClusters  affected  )

static

Definition at line 906 of file DI_clusters.cxx.

References ALL_CLUSTERS, ClustersData::clear(), delete_selected_cluster(), AW_window::get_root(), SEL_CLUSTER, select_cluster(), SHOWN_CLUSTERS, update_cluster_sellist(), and with_affected_clusters_do().

Referenced by DI_create_cluster_detection_window().

static void store_selected_cluster ( ClusterPtr  cluster )

static

Definition at line 923 of file DI_clusters.cxx.

References Cluster::get_ID(), ClustersData::idAtPos(), select_cluster(), SHOWN_CLUSTERS, and ClustersData::store().

Referenced by store_clusters().

static void store_clusters ( AW_window *  aww, AffectedClusters  affected  )

static

Definition at line 930 of file DI_clusters.cxx.

References ALL_CLUSTERS, AW_window::get_root(), SEL_CLUSTER, select_cluster(), ClustersData::store_all(), store_selected_cluster(), update_all(), and with_affected_clusters_do().

Referenced by DI_create_cluster_detection_window().

static void restore_clusters ( AW_window *  aww )

static

Definition at line 945 of file DI_clusters.cxx.

References ClustersData::restore_all(), and update_all().

Referenced by DI_create_cluster_detection_window().

static void swap_clusters ( AW_window *  aww )

static

Definition at line 949 of file DI_clusters.cxx.

References select_cluster(), ClustersData::swap_all(), and update_all().

Referenced by DI_create_cluster_detection_window().

AW_window* DI_create_cluster_detection_window	(	AW_root *	aw_root,
		WeightedFilter *	weightedFilter
	)

Definition at line 958 of file DI_clusters.cxx.

References AW_awar::add_callback(), ALL_CLUSTERS, AW_POPDOWN(), AW_root::awar(), AWAR_CLUSTER_AUTOMARK, AWAR_CLUSTER_MARKREP, AWAR_CLUSTER_MAXDIST, AWAR_CLUSTER_MINSIZE, AWAR_CLUSTER_ORDER, AWAR_CLUSTER_RESTORE_LABEL, AWAR_CLUSTER_SELECTED, AWAR_CLUSTER_SELECTREP, AWAR_DIST_TREE_CURR_NAME, calculate_clusters(), cl_assert, ClustersData::clusterList, CMM_ALL, CMM_ALL_BUT_REP, CMM_ONLY_REP, delete_clusters(), di_forget_global_data(), makeHelpCallback(), mark_clusters(), NULp, popup_group_clusters_window(), restore_clusters(), SEL_CLUSTER, select_cluster_cb(), SORT_BY_CLUSTERSIZE, SORT_BY_MAX_DIST, SORT_BY_MEANDIST, SORT_BY_MIN_BASES, SORT_BY_MIN_DIST, SORT_BY_TREEPOSITION, sort_order_changed_cb(), SORT_REVERSE, store_clusters(), swap_clusters(), and update_cluster_sellist().

Referenced by DI_create_matrix_window().

void DI_create_cluster_awars	(	AW_root *	aw_root,
		AW_default	def,
		AW_default	db
	)

Definition at line 1061 of file DI_clusters.cxx.

References AW_awar::add_callback(), AWAR_CLUSTER_AUTOMARK, AWAR_CLUSTER_GROUP_EXAMPLE, AWAR_CLUSTER_GROUP_EXISTING, AWAR_CLUSTER_GROUP_IDENTITY, AWAR_CLUSTER_GROUP_NOTFOUND, AWAR_CLUSTER_GROUP_PARTSEP, AWAR_CLUSTER_GROUP_PREFIX, AWAR_CLUSTER_GROUP_PREFIX_MATCH, AWAR_CLUSTER_GROUP_SUFFIX, AWAR_CLUSTER_GROUP_WHAT, AWAR_CLUSTER_MARKREP, AWAR_CLUSTER_MAXDIST, AWAR_CLUSTER_MINSIZE, AWAR_CLUSTER_ORDER, AWAR_CLUSTER_RESTORE_LABEL, AWAR_CLUSTER_SELECTED, AWAR_CLUSTER_SELECTREP, AW_root::awar_float(), AW_root::awar_int(), AW_root::awar_string(), AWAR_TREE_REFRESH, CMM_ALL_BUT_REP, EXISTING_GROUP_ABORT, GROUP_LISTED, NOTFOUND_ABORT, AW_awar::set_minmax(), SORT_BY_MEANDIST, and update_example().

Referenced by DI_create_matrix_variables().

Variable Documentation

ClustersData* global_data = NULp

static

Definition at line 90 of file DI_clusters.cxx.