ARB
Macros | Functions | Variables
seq_search.cxx File Reference
#include "seq_search.hxx"
#include <arbdbt.h>
#include <cstdarg>
#include <climits>
#include <cctype>
Include dependency graph for seq_search.cxx:

Go to the source code of this file.

Macros

#define MESSAGE_BUFFERSIZE   300
 

Functions

 __ATTR__FORMAT (1) static void messagef(const char *format
 
 va_start (argp, format)
 
 fa_assert (chars< MESSAGE_BUFFERSIZE)
 
 va_end (argp)
 
 GB_warning (buffer)
 

Variables

va_list argp
 
char buffer [MESSAGE_BUFFERSIZE]
 
int chars = vsprintf(buffer, format, argp)
 
static CharPredicate pred_is_ali_gap (is_ali_gap)
 

Macro Definition Documentation

#define MESSAGE_BUFFERSIZE   300

Definition at line 19 of file seq_search.cxx.

Function Documentation

__ATTR__FORMAT ( ) const
va_start ( argp  ,
format   
)
fa_assert ( )
va_end ( argp  )
GB_warning ( buffer  )

Variable Documentation

va_list argp

Definition at line 33 of file seq_search.cxx.

Definition at line 34 of file seq_search.cxx.

Referenced by aed_start_naligning(), aisc_add_message_queue(), aisc_server_load_token(), aisc_server_save_token(), ALI_realign_marked(), alidata2buffer(), alignCompactedTo(), AP_get_codons(), apply_ACI(), ARB_dateTime_suffix(), ARB_executable(), ARB_float_2_ascii(), arb_gethostname(), arb_prm_primer(), arb_reduce_primer_len(), ARB_textfiles_have_difflines(), ARB_zfopen(), AW_rgb16::ascii(), AW_window::at_ifdef(), aw_status_read_byte(), aw_status_read_command(), aw_status_read_int(), aw_status_timer_listen_event(), AW_xfig::AW_xfig(), aw_xkey_2_awkey(), awar_name_tmp(), awarname(), awt_create_select_filter_window_aw_cb(), build_GBDATA_path(), ED4_SearchResults::buildColorString(), ChecksumCollector::checksum(), iupac::combine(), CON_export(), AP_userdef_matrix::create_awars(), File_selection::create_gui_elements(), AP_userdef_matrix::create_input_fields(), create_probe_collection_window(), create_probe_design_variables(), QUERY::create_query_box(), detect_bitmap_size(), ArbImporter::detect_format(), dump_internal(), ED4_get_marked_from_menu(), ED4_SearchResults::ED4_SearchResults(), ED4_show_protein_match_on_device(), ed_submit_gen_event(), ensure_buffer(), errorf(), field_awar(), PS_FileBuffer::flush(), g_b_uncompress_single_sequence_by_master(), gb_bin_2_ascii(), gb_compress_bits(), gb_compress_by_dictionary(), gb_compress_equal_bytes(), gb_compress_equal_bytes_2(), gb_compress_huffmann(), gb_compress_seq_by_master(), gb_create_dictionary(), GB_find_all_files(), GB_find_latest_file(), GB_follow_unix_link(), GB_get_GBDATA_path(), GB_is_in_buffer(), gb_load_single_key_data(), GB_map_FILE(), GB_map_file(), gb_read_bin(), gb_read_bin_rek_V2(), gb_scan_directory(), gb_uncompress_bits(), gb_uncompress_by_dictionary_internal(), gb_uncompress_equal_bytes(), gb_uncompress_huffmann(), gb_write_bin_rek(), GB_write_lossless_byte(), GB_write_lossless_float(), GB_write_lossless_int(), gbcm_read_bin(), gbcm_unfold_client(), gbcmc_begin_transaction(), gbcmc_end_sendupdate(), gbcmc_init_transaction(), gbcmc_read_keys(), gbcmc_sendupdate_create(), gbcmc_sendupdate_update(), gbcms_talking_begin_transaction(), gbcms_talking_find(), gbcms_talking_put_update(), gbcms_talking_unfold(), gbcms_write_deleted(), gbcms_write_keys(), gbcms_write_updated(), GBS_escape_string(), GBS_fconvert_string(), GBS_floatcat(), GBS_intcat(), GBS_readable_timediff(), GBS_unescape_string(), gbt_rename_tree_rek(), GBT_save_colorset(), gbt_write_tree_rek_new(), GDE_startaction_cb(), GEN_gene::GEN_gene(), GEN_update_GENE_CONTENT(), Structure3D::GenerateInsertionDisplayList(), PS_FileBuffer::get(), get_atcc(), get_design_hinfo(), get_design_info(), get_list_part(), getAAgroupDefinition(), gtom(), has_ascii_db_id(), insert_new_species_terminal(), KeyPressEventHandler(), LineReader::lineError(), load_probe_collection(), load_search_paras_from_file(), main(), MissingArgumentFor(), MP_match_string(), mygetc(), nextch(), NT_update_marked_counter(), Writer::outf(), PS_FileBuffer::peek(), PH_create_ml_multiline_SAI(), PH_save_ml_cb(), probe_collection_update_parameters(), PS_extract_probe_data(), PS_FileBuffer::PS_FileBuffer(), PS_get_probe_for_path(), PS_GNUPlot(), PS_print_paths(), PTD_read_leafs_from_disk(), PS_FileBuffer::put(), read_aisc_file(), SEQIO::read_string_pair(), readable_combined_protein(), ReadGen(), readLine(), ReadNA_Flat(), Realigner::realign_seq(), resolve_IUPAC_target_string(), sec2disp(), settingName(), st_ml_add_quality_string_to_species(), streamIntFunResultsInBrackets(), strf(), throw_errorf(), TransTables::to_string(), truncate_4000(), UnknownOption(), AP_userdef_matrix::update_from_awars(), GBS_strstruct::vnprintf(), warningf(), and AW_window::window_local_awarname().

int chars = vsprintf(buffer, format, argp)

Definition at line 38 of file seq_search.cxx.

Referenced by formatted(), gbl_extract_sequence(), and update_RangeList().

CharPredicate pred_is_ali_gap(is_ali_gap)
static