arb_read_tree.cxx File Reference

#include <TreeRead.h>
#include <TreeNode.h>
#include <arb_strbuf.h>
#include <arb_defs.h>
#include <ctime>

Include dependency graph for arb_read_tree.cxx:

Go to the source code of this file.

Classes
struct	parameters

Macros
#define	SHIFT_ARGS(off)   do { argc -= off; argv += off; } while (0)
#define	SHIFT_NONSWITCHES(off)   do { nonSwitches -= off; nonSwitch += off; } while (0)

Functions
static void	add_bootstrap (TreeNode *node, double hundred)
static void	show_message (const char *msg)
static void	show_error (GB_ERROR error)
static void	error_with_usage (GB_ERROR error)
int	main (int argc, char **argv)

Variables
static GBDATA *	gb_msg_main = NULp

Macro Definition Documentation

#define SHIFT_ARGS

(

off

)

do { argc -= off; argv += off; } while (0)

Definition at line 108 of file arb_read_tree.cxx.

Referenced by parameters::scan().

#define SHIFT_NONSWITCHES

(

off

)

do { nonSwitches -= off; nonSwitch += off; } while (0)

Definition at line 109 of file arb_read_tree.cxx.

Referenced by parameters::scan().

Function Documentation

static void add_bootstrap ( TreeNode *  node, double  hundred  )

static

Definition at line 18 of file arb_read_tree.cxx.

References DEFAULT_BRANCH_LENGTH, TreeNode::is_leaf(), TreeNode::leftlen, TreeNode::leftson, TreeNode::remove_remark(), TreeNode::rightlen, TreeNode::rightson, and TreeNode::set_bootstrap().

Referenced by main().

static void show_message ( const char *  msg )

static

Definition at line 56 of file arb_read_tree.cxx.

References fflush(), and GBT_message().

Referenced by main(), and show_error().

static void show_error ( GB_ERROR  error )

static

Definition at line 65 of file arb_read_tree.cxx.

References GBS_global_string(), and show_message().

Referenced by error_with_usage(), and main().

static void error_with_usage ( GB_ERROR  error )

static

Definition at line 69 of file arb_read_tree.cxx.

References fputs(), and show_error().

Referenced by main().

int main	(	int	argc,
		char **	argv
	)

Definition at line 187 of file arb_read_tree.cxx.

References add_bootstrap(), ARRAY_ELEMS, parameters::calculated_trees, GBS_strstruct::cat(), parameters::comment, parameters::commentFile, parameters::consense, parameters::dbname, parameters::dbsavename, destroy(), error(), error_with_usage(), EXIT_FAILURE, EXIT_SUCCESS, GB_await_error(), GB_begin_transaction(), GB_close(), GB_end_transaction(), gb_main, GB_open(), GB_read_file(), GB_save_as(), GBS_global_string(), GBS_global_string_copy(), GBT_write_tree(), GBT_write_tree_remark(), GBS_strstruct::get_data(), TreeNode::is_leaf(), NULp, GBS_strstruct::put(), parameters::scale, parameters::scale_factor, parameters::scan(), show_error(), show_message(), TREE_load(), parameters::tree_name, TREE_scale(), parameters::treefilename, UNCOVERED, and warnings.

Variable Documentation

GBDATA* gb_msg_main = NULp

static

Definition at line 54 of file arb_read_tree.cxx.