DBwriter.cxx File Reference

#include "DBwriter.h"
#include <algorithm>
#include <AW_rename.hxx>
#include <Translate.hxx>
#include <aw_question.hxx>
#include <GEN.hxx>
#include <adGene.h>
#include <arb_stdstr.h>

Include dependency graph for DBwriter.cxx:

Go to the source code of this file.

Classes
struct	Translator
class	PosGene
class	hasType

Macros
#define	AW_RENAME_SKIP_GUI
#define	ARB_GENE_REF   "ARB_is_gene"

Typedefs
typedef map< string, string, NoCaseCmp >	TranslateMap

Functions
typedef	SmartCustomPtr (GEN_position, GEN_free_position) GEN_positionPtr
static GBDATA *	DB_create_container (GBDATA *parent, const char *name, bool mark)
static GBDATA *	DB_create_string_field (GBDATA *parent, const char *field, const char *content)
static GBDATA *	DB_create_byte_field (GBDATA *parent, const char *field, unsigned char content)
static void	importerWarning (AW_CL cl_importer, const char *message)
bool	operator< (const GEN_positionPtr &A, const GEN_positionPtr &B)
bool	operator< (const PosGene &a, const PosGene &b)
bool	operator== (const PosGene &a, const PosGene &b)

Macro Definition Documentation

#define AW_RENAME_SKIP_GUI

Definition at line 14 of file DBwriter.cxx.

#define ARB_GENE_REF   "ARB_is_gene"

Definition at line 24 of file DBwriter.cxx.

Referenced by PosGene::addRefToGene().

Typedef Documentation

typedef map<string, string, NoCaseCmp> TranslateMap

Definition at line 109 of file DBwriter.cxx.

Function Documentation

typedef SmartCustomPtr	(	GEN_position	,
		GEN_free_position
	)

static GBDATA* DB_create_container ( GBDATA *  parent, const char *  name, bool  mark  )

static

Definition at line 47 of file DBwriter.cxx.

References GB_create_container(), GB_write_flag(), and GBS_global_string().

Referenced by DBwriter::createOrganism(), and DBwriter::writeFeature().

static GBDATA* DB_create_string_field ( GBDATA *  parent, const char *  field, const char *  content  )

static

Definition at line 57 of file DBwriter.cxx.

References GB_create(), GB_STRING, GB_write_string(), GBS_global_string(), and gi_assert.

Referenced by PosGene::addRefToGene(), DBwriter::createOrganism(), DBwriter::finalizeOrganism(), and DBwriter::writeFeature().

static GBDATA* DB_create_byte_field ( GBDATA *  parent, const char *  field, unsigned char  content  )

static

Definition at line 74 of file DBwriter.cxx.

References GB_BYTE, GB_create(), GB_write_byte(), and GBS_global_string().

Referenced by PosGene::hide(), and DBwriter::writeFeature().

static void importerWarning ( AW_CL  cl_importer, const char *  message  )

static

Definition at line 238 of file DBwriter.cxx.

References importer, and Importer::warning().

bool operator< ( const GEN_positionPtr &  A, const GEN_positionPtr &  B  )

inline

Definition at line 250 of file DBwriter.cxx.

References A, cmp, GEN_position::complement, GEN_position::parts, GEN_position::start_pos, and GEN_position::stop_pos.

bool operator< ( const PosGene &  a, const PosGene &  b  )

inline

Definition at line 313 of file DBwriter.cxx.

References PosGene::getPosition().

bool operator== ( const PosGene &  a, const PosGene &  b  )

inline

Definition at line 316 of file DBwriter.cxx.