#include <aw_base.hxx>#include <arbdb_base.h>#include <items.h>
Go to the source code of this file.
Macros | |
| #define | AWAR_GENE_NAME "tmp/gene/name" |
Functions | |
| void | GEN_create_awars (AW_root *aw_root, AW_default aw_def, GBDATA *gb_main) |
| void | GEN_popup_gene_infowindow (AW_root *aw_root, GBDATA *gb_main) |
| AW_window * | GEN_create_gene_query_window (AW_root *aw_root, GBDATA *gb_main) |
| AW_window * | GEN_create_first_map (AW_root *aw_root, GBDATA *gb_main) |
| void | GEN_create_genes_submenu (AW_window_menu_modes *awm, GBDATA *gb_main, bool for_ARB_NTREE) |
| GBDATA * | GEN_get_current_organism (GBDATA *gb_main) |
| GB_ERROR | GEN_testAndRemoveTranslations (GBDATA *gb_gene_data, void(*warn)(AW_CL cd, const char *msg), AW_CL cd, AW_repeated_question *ok_to_ignore_wrong_start_codon) |
| ItemSelector & | GEN_get_selector () |
Macro Definition Documentation
| #define AWAR_GENE_NAME "tmp/gene/name" |
Definition at line 33 of file GEN.hxx.
Referenced by add_selected_gene_changed_cb(), GEN_item_type_species_selector::current(), GEN_add_global_awar_callbacks(), GEN_create_awars(), GEN_get_current_gene(), GEN_local_lock_changed_cb(), GEN_organism_or_gene_changed_cb(), GEN_select_gene(), GEN_species_name_changed_cb(), GEN_update_combined_cb(), GEN_update_GENE_CONTENT(), gene_copy_cb(), gene_copy_handler(), gene_create_cb(), gene_rename_cb(), gene_rename_handler(), get_gene_create_or_locationEdit_window(), primer_design_event_init(), and selected_match_changed_cb().
Function Documentation
| void GEN_create_awars | ( | AW_root * | aw_root, |
| AW_default | aw_def, | ||
| GBDATA * | gb_main | ||
| ) |
Definition at line 350 of file GEN_interface.cxx.
References AW_awar::add_callback(), AWAR_COMBINED_GENE_NAME, AWAR_GENE_CONTENT, AWAR_GENE_DEST, AWAR_GENE_NAME, AWAR_ORGANISM_NAME, AWAR_SPECIES_NAME, AW_root::awar_string(), GEN_species_name_changed_cb(), GEN_update_combined_cb(), and NULp.
Referenced by nt_create_all_awars().
Definition at line 960 of file GEN_interface.cxx.
References InfoWindow::MAIN_WINDOW, NULp, popup_new_gene_window(), and InfoWindowRegistry::reactivate().
Referenced by GEN_create_gene_query_window(), GEN_create_genes_submenu(), and GEN_graphic::handle_command().
Definition at line 970 of file GEN_interface.cxx.
References AW_window::at(), AW_POPDOWN(), AWAR_SPECIES_NAME, AWAR_TREE, AWM_ALL, AW_window::button_length(), QUERY::query_spec::by_pos_fig, AW_window::callback(), QUERY::query_spec::config_pos_fig, QUERY::query_spec::count_pos_fig, AW_window::create_button(), AW_window::create_menu(), QUERY::create_query_box(), QUERY::query_spec::do_delete_pos_fig, QUERY::query_spec::do_mark_pos_fig, QUERY::query_spec::do_query_pos_fig, QUERY::query_spec::do_refresh_pos_fig, QUERY::query_spec::do_set_pos_fig, QUERY::query_spec::do_unmark_pos_fig, QUERY::query_spec::ere_pos_fig, gb_main, QUERY::query_spec::gb_main, GB_USERFLAG_QUERY, GEN_get_selector(), GEN_popup_gene_infowindow(), AW_window_simple_menu::init(), AW_window::insert_menu_topic(), QUERY::query_spec::key_pos_fig, AW_window::load_xfig(), makeHelpCallback(), NULp, QUERY::query_spec::open_parser_pos_fig, QUERY::query_spec::popup_info_window, QUERY::query_spec::qbox_pos_fig, QUERY::query_spec::query_pos_fig, QUERY::query_spec::result_pos_fig, QUERY::search_duplicated_field_content(), QUERY::query_spec::select_bit, QUERY::query_spec::species_name, QUERY::query_spec::tree_name, QUERY::query_spec::use_menu, and QUERY::query_spec::where_pos_fig.
Referenced by GEN_create_genes_submenu(), GEN_map_window::init(), and popup_new_gene_window().
Definition at line 1585 of file GEN_map.cxx.
References GEN_create_map().
Referenced by GEN_create_genes_submenu(), and popup_new_main_window().
| void GEN_create_genes_submenu | ( | AW_window_menu_modes * | awm, |
| GBDATA * | gb_main, | ||
| bool | for_ARB_NTREE | ||
| ) |
Definition at line 1483 of file GEN_map.cxx.
References AWM_ALL, create_colorize_genes_window(), AW_window::create_menu(), EXP_create_experiments_submenu(), GEN_COUNT_MARKED, GEN_create_first_map(), GEN_create_gene_query_window(), GEN_create_gene_species_submenu(), GEN_create_mask_submenu(), GEN_create_organism_submenu(), GEN_insert_extract_submenu(), GEN_insert_mark_submenu(), GEN_INVERT_MARKED, GEN_MARK, GEN_MARK_HIDDEN, GEN_MARK_VISIBLE, GEN_popup_gene_infowindow(), GEN_UNMARK, GEN_UNMARK_HIDDEN, GEN_UNMARK_VISIBLE, AW_window::insert_menu_topic(), AW_window::local_id(), mark_genes_of_marked_gene_species(), NULp, AW_window::sep______________(), and RootAsWindowCallback::simple().
Referenced by GEN_map_window::init(), and popup_new_main_window().
Definition at line 363 of file GEN_interface.cxx.
References AW_root::awar(), AWAR_ORGANISM_NAME, GBT_find_species(), AW_awar::read_string(), and AW_root::SINGLETON.
Referenced by EXP_get_current_experiment(), GEN_get_current_gene(), GEN_perform_command(), GEN_update_GENE_CONTENT(), get_current_experiment_data(), and get_current_gene_data().
| GB_ERROR GEN_testAndRemoveTranslations | ( | GBDATA * | gb_gene_data, |
| void(*)(AW_CL cd, const char *msg) | warn, | ||
| AW_CL | cd, | ||
| AW_repeated_question * | ok_to_ignore_wrong_start_codon | ||
| ) |
Definition at line 157 of file GEN_translations.cxx.
References error(), GB_entry(), GB_IGNORE_CASE, GB_nextEntry(), GBS_create_hash(), GBS_free_hash(), GBS_global_string(), GBS_hashtab_2_string(), GBS_incr_hash(), gen_assert, GRS_FAILED, GRS_NO_CHANGE, GRS_NOTE_ADDED, GRS_START_CODON_WRONG, GRS_TRANSLATION_FAILED, GRS_TRANSLATION_REMOVED, NULp, and remove_redundant_translation().
| ItemSelector& GEN_get_selector | ( | ) |
Definition at line 247 of file GEN_interface.cxx.
References GEN_item_selector.
Referenced by create_colorize_genes_window(), GEN_create_field_items(), GEN_create_gene_query_window(), GEN_open_nds_window(), CheckedConsistencies::perform_item_checks(), and popup_new_gene_window().
