#include "AP_pro_a_nucs.hxx"#include <AP_codon_table.hxx>#include <arbdbt.h>#include <ad_cb.h>#include <arb_str.h>#include <algorithm>
Go to the source code of this file.
Macros | |
| #define | pn_assert(cond) arb_assert(cond) |
| #define | T2I_ENTRIES_MAX 196 |
| #define | CACHED_TRANSLATORS 4 |
Functions | |
| char * | AP_create_dna_to_ap_bases () |
| static int | codon_defined_in (const char *codon, const char *codons) |
| static int | nuc_dist (const AWT_translator *translator, unsigned char p1, unsigned char p2) |
| static void | user_code_nr_changed_cb (GBDATA *gb_awar) |
| AWT_translator * | AWT_get_translator (int code_nr) |
| int | AWT_default_protein_type (GBDATA *gb_main) |
| AWT_translator * | AWT_get_user_translator (GBDATA *gb_main) |
Variables | |
| static int | current_user_code_nr = -1 |
Macro Definition Documentation
| #define pn_assert | ( | cond | ) | arb_assert(cond) |
Definition at line 19 of file AP_pro_a_nucs.cxx.
Referenced by AP_create_dna_to_ap_bases(), AWT_default_protein_type(), AWT_get_translator(), and AWT_translator::AWT_translator().
| #define T2I_ENTRIES_MAX 196 |
Definition at line 156 of file AP_pro_a_nucs.cxx.
Referenced by AWT_translator::AWT_translator().
| #define CACHED_TRANSLATORS 4 |
Definition at line 380 of file AP_pro_a_nucs.cxx.
Referenced by AWT_get_translator().
Function Documentation
| char* AP_create_dna_to_ap_bases | ( | ) |
Definition at line 21 of file AP_pro_a_nucs.cxx.
References AP_A, AP_C, AP_DOT, AP_G, AP_GAP, AP_T, pn_assert, and safeCharIndex().
Referenced by AWT_translator::AWT_translator(), and AP_pos_var::retrieve().
Definition at line 143 of file AP_pro_a_nucs.cxx.
Referenced by AWT_translator::AWT_translator().
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static |
Definition at line 263 of file AP_pro_a_nucs.cxx.
References arb_r2a_pro_2_nucs::next, arb_r2a_pro_2_nucs::nucbits, arb_r2a_pro_2_nuc::nucs, and AWT_translator::S2str().
Referenced by AWT_distance_meter::AWT_distance_meter().
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static |
Definition at line 373 of file AP_pro_a_nucs.cxx.
References GB_get_root(), gb_main, GB_read_int(), and ta.
Referenced by AWT_default_protein_type().
| AWT_translator* AWT_get_translator | ( | int | code_nr | ) |
Definition at line 382 of file AP_pro_a_nucs.cxx.
References CACHED_TRANSLATORS, SmartPtr< T, C >::isNull(), SmartPtr< T, C >::isSet(), pn_assert, SmartPtr< T, C >::setNull(), and swap().
Referenced by AWT_get_user_translator().
Definition at line 414 of file AP_pro_a_nucs.cxx.
References AWAR_PROTEIN_TYPE, current_user_code_nr, GB_add_callback(), GB_CB_CHANGED, GB_INT, GB_search(), pn_assert, ta, and user_code_nr_changed_cb().
Referenced by AWT_get_user_translator(), PV_WriteTranslatedSequenceToDB(), and TranslateGeneToAminoAcidSequence().
| AWT_translator* AWT_get_user_translator | ( | GBDATA * | gb_main | ) |
Definition at line 433 of file AP_pro_a_nucs.cxx.
References AWT_default_protein_type(), and AWT_get_translator().
Referenced by AP_pos_var::retrieve().
Variable Documentation
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static |
Definition at line 371 of file AP_pro_a_nucs.cxx.
Referenced by AWT_default_protein_type().
