SEC_root.hxx File Reference

#include <iosfwd>
#include <aw_font_group.hxx>
#include "SEC_abspos.hxx"
#include "SEC_gc.hxx"
#include "SEC_db.hxx"
#include <BI_helix.hxx>
#include <arb_global_defs.h>
#include "secedit_extern.hxx"

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Classes
class	SEC_region
class	SEC_constrainted
class	SEC_oriented
class	SEC_base
class	SEC_base_part
class	FINAL_TYPE< SEQTYPE >
	xml element More...
class	FINAL_TYPE< SEQTYPE >
	xml element More...
class	FINAL_TYPE< SEQTYPE >
	xml element More...
class	FINAL_TYPE< SEQTYPE >
	xml element More...
struct	SEC_displayParams
class	SEC_root

Macros
#define	DATA_VERSION   3

Enumerations
enum	SEC_BASE_TYPE { SEC_NO_TYPE = 0, SEC_LOOP = 1, SEC_HELIX = 2, SEC_ANY_TYPE = SEC_LOOP|SEC_HELIX }
enum	ShowBonds { SHOW_NO_BONDS = 0, SHOW_HELIX_BONDS = 1, SHOW_NHELIX_BONDS = 2 }
enum	ShowCursorPos { SHOW_NO_CURPOS = 0, SHOW_ABS_CURPOS = 1, SHOW_ECOLI_CURPOS = 2, SHOW_BASE_CURPOS = 3 }
enum	SEC_bgpaint_mode { BG_PAINT_NONE = 0, BG_PAINT_FIRST = 1, BG_PAINT_SECOND = 2, BG_PAINT_BOTH = BG_PAINT_FIRST | BG_PAINT_SECOND }

Functions
bool	SEC_is_gap (char c)
bool	are_adjacent_regions (const SEC_region *reg1, const SEC_region *reg2)

Macro Definition Documentation

#define DATA_VERSION   3

Definition at line 43 of file SEC_root.hxx.

Referenced by SEC_root::buildStructureString(), and SEC_root::read_data().

Enumeration Type Documentation

enum SEC_BASE_TYPE

Enumerator
SEC_NO_TYPE
SEC_LOOP
SEC_HELIX
SEC_ANY_TYPE

Definition at line 257 of file SEC_root.hxx.

enum ShowBonds

Enumerator
SHOW_NO_BONDS
SHOW_HELIX_BONDS
SHOW_NHELIX_BONDS

Definition at line 621 of file SEC_root.hxx.

enum ShowCursorPos

Enumerator
SHOW_NO_CURPOS
SHOW_ABS_CURPOS
SHOW_ECOLI_CURPOS
SHOW_BASE_CURPOS

Definition at line 627 of file SEC_root.hxx.

enum SEC_bgpaint_mode

Enumerator
BG_PAINT_NONE
BG_PAINT_FIRST
BG_PAINT_SECOND
BG_PAINT_BOTH

Definition at line 672 of file SEC_root.hxx.

Function Documentation

bool SEC_is_gap ( char  c )

inline

Definition at line 45 of file SEC_root.hxx.

References GAP::is_std_gap().

Referenced by SEC_db_interface::update_shown_positions().

bool are_adjacent_regions ( const SEC_region *  reg1, const SEC_region *  reg2  )

inline

Definition at line 996 of file SEC_root.hxx.

References SEC_region::get_sequence_end(), and SEC_region::get_sequence_start().

Referenced by SEC_root::split_loop().