#include <servercntrl.h>
#include <arbdb.h>
#include <awt.hxx>
#include <aw_preset.hxx>
#include <aw_root.hxx>
#include <macros.hxx>
#include <aw_question.hxx>
#include <awt_TreeAwars.hxx>

Include dependency graph for DI_main.cxx:

Functions
AW_HEADER_MAIN AW_window *	DI_create_matrix_window (AW_root aw_root, GBDATA gb_main)

GB_ERROR	DI_create_matrix_variables (AW_root *aw_root, AW_default aw_def, AW_default db)

static unsigned	DI_timer (AW_root , GBDATA gb_main)

int	ARB_main (int argc, char *argv[])

Function Documentation

AW_HEADER_MAIN AW_window* DI_create_matrix_window	(	AW_root *	aw_root,
		GBDATA *	gb_main
	)

Definition at line 1605 of file DI_matr.cxx.

References ARB_in_expert_mode(), AW_window::at(), AW_insert_common_property_menu_entries(), AW_preset_window(), AW_save_properties(), AW_root::awar(), save_matrix_params::awar_base, AWAR_DIST_ALIGNMENT, AWAR_DIST_BOOTSTRAP_COUNT, AWAR_DIST_CANCEL_CHARS, AWAR_DIST_COLUMN_STAT_NAME, AWAR_DIST_CORR_TRANS, AWAR_DIST_FILTER_NAME, AWAR_DIST_MATRIX_AUTO_CALC_TREE, AWAR_DIST_MATRIX_AUTO_RECALC, AWAR_DIST_MATRIX_DNA_ENABLED, AWAR_DIST_MAX_DIST, AWAR_DIST_MIN_DIST, AWAR_DIST_SAVE_MATRIX_BASE, AWAR_DIST_TREE_COMP_NAME, AWAR_DIST_TREE_CURR_NAME, AWAR_DIST_TREE_SORT_NAME, AWAR_DIST_TREE_STD_NAME, AWAR_DIST_WHICH_SPECIES, AW_root::awar_string(), AWM_ALL, AWM_EXP, awt_create_ALI_selection_list(), awt_create_select_cancel_window(), awt_create_select_filter_win(), awt_create_TREE_selection_list(), AW_window::button_length(), AW_window::callback(), COLSTAT_create_selection_window(), AW_window::create_autosize_button(), AW_window::create_button(), create_dna_matrix_window(), AW_window::create_input_field(), AW_window::create_menu(), AW_window::create_option_menu(), AW_window::create_toggle(), di_autodetect_callback(), di_calculate_compressed_matrix_cb(), di_calculate_full_matrix_cb(), di_calculate_tree_cb(), DI_create_cluster_detection_window(), DI_create_save_matrix_window(), di_define_compression_tree_name_cb(), di_define_save_tree_name_cb(), di_define_sort_tree_name_cb(), di_exit(), di_mark_by_distance(), DI_TRANSFORMATION_CATEGORIES_BARKER, DI_TRANSFORMATION_CATEGORIES_CHEMICAL, DI_TRANSFORMATION_CATEGORIES_HALL, DI_TRANSFORMATION_FELSENSTEIN, DI_TRANSFORMATION_FELSENSTEIN_VOIGT, DI_TRANSFORMATION_FROM_TREE, DI_TRANSFORMATION_JUKES_CANTOR, DI_TRANSFORMATION_KIMURA, DI_TRANSFORMATION_NONE, DI_TRANSFORMATION_OLSEN, DI_TRANSFORMATION_OLSEN_VOIGT, DI_TRANSFORMATION_PAM, DI_TRANSFORMATION_SIMILARITY, di_view_matrix_cb(), GB_pop_transaction(), GB_push_transaction(), WeightedFilter::get_adfiltercbstruct(), WeightedFilter::get_column_stat(), AW_window::get_root(), AW_window_simple_menu::init(), AW_window::insert_default_option(), AW_window::insert_help_topic(), insert_macro_menu_entry(), AW_window::insert_menu_topic(), AW_window::insert_option(), AW_window::label(), AW_window::load_xfig(), makeHelpCallback(), AW_window::sens_mask(), AW_window::sep______________(), AW_window::update_option_menu(), save_matrix_params::weighted_filter, and AW_awar::write_int().

Referenced by ARB_main().

GB_ERROR DI_create_matrix_variables	(	AW_root *	aw_root,
		AW_default	aw_def,
		AW_default	db
	)

Definition at line 196 of file DI_matr.cxx.

References AW_awar::add_callback(), AP_A, AP_C, AP_G, AP_GAP, AP_T, auto_calc_changed_cb(), AW_create_fileselection_awars(), AW_ROOT_DEFAULT, AW_root::awar(), AWAR_DIST_ALIGNMENT, AWAR_DIST_BOOTSTRAP_COUNT, AWAR_DIST_CANCEL_CHARS, AWAR_DIST_CORR_TRANS, AWAR_DIST_FILTER_ALIGNMENT, AWAR_DIST_FILTER_FILTER, AWAR_DIST_FILTER_NAME, AWAR_DIST_FILTER_SIMPLIFY, AWAR_DIST_MATRIX_AUTO_CALC_TREE, AWAR_DIST_MATRIX_AUTO_RECALC, AWAR_DIST_MATRIX_DNA_BASE, AWAR_DIST_MATRIX_DNA_ENABLED, AWAR_DIST_MAX_DIST, AWAR_DIST_MIN_DIST, AWAR_DIST_SAVE_MATRIX_BASE, AWAR_DIST_SAVE_MATRIX_TYPE, AWAR_DIST_TREE_COMP_NAME, AWAR_DIST_TREE_CURR_NAME, AWAR_DIST_TREE_SORT_NAME, AWAR_DIST_TREE_STD_NAME, AWAR_DIST_WHICH_SPECIES, AW_root::awar_float(), AW_root::awar_int(), AWAR_SPECIES_NAME, AW_root::awar_string(), AWAR_TREE, AWT_registerTreeAwarCallback(), compressed_matrix_needs_recalc_cb(), AP_userdef_matrix::create_awars(), DI_create_cluster_awars(), DI_TRANSFORMATION_COUNT, DI_TRANSFORMATION_SIMILARITY, GB_add_callback(), GB_await_error(), GB_CB_CHANGED, GB_FIND, GB_pop_transaction(), GB_push_transaction(), GB_search(), gb_species_data, GBT_get_default_alignment(), GBT_get_species_data(), AW_awar::map(), matrix_needs_recalc_cb(), NO_TREE_SELECTED, NULp, AW_awar::read_string(), selected_tree_changed_cb(), AP_userdef_matrix::set_descriptions(), AW_awar::set_minmax(), ta, userdef_DNA_matrix, and AW_awar::write_string().

Referenced by ARB_main().

static unsigned DI_timer	(	AW_root *	,
		GBDATA *	gb_main
	)

static

Definition at line 27 of file DI_main.cxx.

References GB_tell_server_dont_wait(), and ta.

Referenced by ARB_main().

int ARB_main	(	int	argc,
		char *	argv[]
	)

Functions

Function Documentation