ARB
Functions | Variables
DI_main.cxx File Reference
#include <servercntrl.h>
#include <arbdb.h>
#include <awt.hxx>
#include <aw_preset.hxx>
#include <aw_root.hxx>
#include <macros.hxx>
#include <aw_question.hxx>
#include <awt_TreeAwars.hxx>
Include dependency graph for DI_main.cxx:

Go to the source code of this file.

Functions

AW_HEADER_MAIN AW_windowDI_create_matrix_window (AW_root *aw_root)
 
void DI_create_matrix_variables (AW_root *aw_root, AW_default aw_def, AW_default db)
 
static unsigned DI_timer (AW_root *, GBDATA *gb_main)
 
int ARB_main (int argc, char *argv[])
 

Variables

GBDATAGLOBAL_gb_main
 

Function Documentation

AW_HEADER_MAIN AW_window* DI_create_matrix_window ( AW_root aw_root)

Definition at line 1528 of file DI_matr.cxx.

References ARB_in_expert_mode(), AW_window::at(), AW_insert_common_property_menu_entries(), AW_preset_window(), AW_save_properties(), AW_root::awar(), save_matrix_params::awar_base, AWAR_DIST_ALIGNMENT, AWAR_DIST_BOOTSTRAP_COUNT, AWAR_DIST_CANCEL_CHARS, AWAR_DIST_COLUMN_STAT_NAME, AWAR_DIST_CORR_TRANS, AWAR_DIST_FILTER_NAME, AWAR_DIST_MATRIX_AUTO_CALC_TREE, AWAR_DIST_MATRIX_AUTO_RECALC, AWAR_DIST_MATRIX_DNA_ENABLED, AWAR_DIST_MAX_DIST, AWAR_DIST_MIN_DIST, AWAR_DIST_SAVE_MATRIX_BASE, AWAR_DIST_TREE_COMP_NAME, AWAR_DIST_TREE_CURR_NAME, AWAR_DIST_TREE_SORT_NAME, AWAR_DIST_TREE_STD_NAME, AWAR_DIST_WHICH_SPECIES, AW_root::awar_string(), AWM_ALL, AWM_EXP, awt_create_ALI_selection_list(), awt_create_select_cancel_window(), awt_create_select_filter_win(), awt_create_TREE_selection_list(), AW_window::button_length(), AW_window::callback(), COLSTAT_create_selection_window(), AW_window::create_autosize_button(), AW_window::create_button(), create_dna_matrix_window(), AW_window::create_input_field(), AW_window::create_menu(), AW_window::create_option_menu(), AW_window::create_toggle(), di_autodetect_callback(), di_calculate_compressed_matrix_cb(), di_calculate_full_matrix_cb(), di_calculate_tree_cb(), DI_create_cluster_detection_window(), DI_create_save_matrix_window(), di_define_compression_tree_name_cb(), di_define_save_tree_name_cb(), di_define_sort_tree_name_cb(), di_exit(), di_mark_by_distance(), DI_TRANSFORMATION_CATEGORIES_BARKER, DI_TRANSFORMATION_CATEGORIES_CHEMICAL, DI_TRANSFORMATION_CATEGORIES_HALL, DI_TRANSFORMATION_FELSENSTEIN, DI_TRANSFORMATION_FELSENSTEIN_VOIGT, DI_TRANSFORMATION_FROM_TREE, DI_TRANSFORMATION_JUKES_CANTOR, DI_TRANSFORMATION_KIMURA, DI_TRANSFORMATION_NONE, DI_TRANSFORMATION_OLSEN, DI_TRANSFORMATION_OLSEN_VOIGT, DI_TRANSFORMATION_PAM, DI_TRANSFORMATION_SIMILARITY, di_view_matrix_cb(), GB_pop_transaction(), GB_push_transaction(), WeightedFilter::get_adfiltercbstruct(), WeightedFilter::get_column_stat(), AW_window::get_root(), GLOBAL_gb_main, AW_window_simple_menu::init(), AW_window::insert_default_option(), AW_window::insert_help_topic(), insert_macro_menu_entry(), AW_window::insert_menu_topic(), AW_window::insert_option(), AW_window::label(), AW_window::load_xfig(), makeHelpCallback(), AW_window::sens_mask(), AW_window::sep______________(), AW_window::update_option_menu(), save_matrix_params::weighted_filter, and AW_awar::write_int().

Referenced by ARB_main().

void DI_create_matrix_variables ( AW_root aw_root,
AW_default  aw_def,
AW_default  db 
)
static unsigned DI_timer ( AW_root ,
GBDATA gb_main 
)
static

Definition at line 30 of file DI_main.cxx.

References GB_tell_server_dont_wait(), and ta.

Referenced by ARB_main().

int ARB_main ( int  argc,
char argv[] 
)

Variable Documentation

GBDATA* GLOBAL_gb_main

Definition at line 27 of file DI_main.cxx.

Referenced by ED4_terminal::changed_by_database(), create_group_species_by_field_window(), ED4_root::create_hierarchy(), create_new_species(), createDataFromConsensus(), ED4_manager::deleted_from_database(), di_autodetect_callback(), di_calculate_compressed_matrix_cb(), di_calculate_matrix(), di_calculate_tree_cb(), DI_create_matrix_window(), di_exit(), di_mark_by_distance(), do_sth_with_species(), dot_missing_bases(), ED4_alignment_length_changed(), ed4_changesecurity(), ED4_compression_changed_cb(), ED4_create_consensus_awars(), ED4_create_loadConfiguration_window(), ED4_create_loadSAI_window(), ED4_create_NDS_awars(), ED4_create_saveConfigurationAs_window(), ED4_create_search_awars(), ED4_exit(), ED4_expose_cb(), ED4_get_aligner_data_access(), ED4_get_and_jump_to_current(), ED4_get_and_jump_to_selected_SAI(), ED4_get_and_jump_to_species(), ED4_get_marked_from_menu(), ED4_helix_jump_opposite(), ED4_horizontal_change_cb(), ED4_input_cb(), ED4_jump_to_current_species(), ED4_load_new_config(), ED4_mark_matching_species(), ED4_menu_highlight(), ED4_motion_cb(), ED4_pfold_select_SAI_and_update_option_menu(), ED4_popup_dot_missing_bases_window(), ED4_remove_faligner_entries(), ED4_resize_cb(), ED4_restore_curpos(), ED4_scrollbar_change_cb(), ED4_selected_SAI_changed_cb(), ED4_selected_species_changed_cb(), ED4_store_curpos(), ED4_timer(), ED4_undo_redo(), ED4_vertical_change_cb(), ED4_with_whole_block(), executeKeystroke(), EDB_root_bact::fill_data(), ED4_root::generate_window(), group_species(), ED4_manager::handle_move(), ED4_root::init_alignment(), init_flag_awars(), insert_new_species_terminal(), modes_cb(), modsai_cb(), new_sina_simple(), SpeciesFlag::prepare_itemfield(), ED4_root::refresh_all_windows(), reload_ecoli_cb(), reload_helix_cb(), remove_from_consensus(), ED4_terminal::resolve_pointer_to_char_pntr(), EDB_root_bact::save_current_config(), SearchTree::SearchTree(), select_named_sequence_terminal(), ED4_cursor::set_to_terminal(), ED4_cursor::show_cursor_at(), sina_start(), trace_termChange_in_global_awar(), ED4_manager::update_bases_and_rebuild_consensi(), and ED4_terminal::write_sequence().