ARB
Classes | Macros | Typedefs | Enumerations | Functions
TreeDisplay.hxx File Reference
#include <AP_Tree.hxx>
#include <Group.hxx>
#include <awt_canvas.hxx>
#include <vector>
#include <map>
Include dependency graph for TreeDisplay.hxx:
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Classes

struct  AWT_scaled_font_limits
 
struct  DendroSubtreeLimits
 
struct  AWT_command_data
 
class  NodeMarkers
 
class  MarkerDisplay
 
struct  GroupInfo
 
class  PaintedNode
 
struct  BootstrapConfig
 
class  AWT_graphic_tree
 
class  ClickedTarget
 
class  TREE_canvas
 

Macros

#define TREEDISP_STACKSIZE   (1024L*1024L*20)
 
#define MAX_TREEDISP_RECURSION_DEPTH   20000
 
#define TREEDISP_TRUNCATION_MESSAGE   "Warning: depth limit reached => subtree not shown (use logical zoom to workaround)"
 
#define td_assert(cond)   arb_assert(cond)
 
#define AWAR_DTREE_BASELINEWIDTH   "awt/dtree/baselinewidth"
 
#define AWAR_DTREE_VERICAL_DIST   "awt/dtree/verticaldist"
 
#define AWAR_DTREE_BRANCH_STYLE   "awt/dtree/branch_style"
 
#define AWAR_DTREE_ATTACH_SIZE   "awt/dtree/attach_size"
 
#define AWAR_DTREE_ATTACH_LEN   "awt/dtree/attach_len"
 
#define AWAR_DTREE_ATTACH_GROUP   "awt/dtree/attach_group"
 
#define AWAR_DTREE_GROUP_DOWNSCALE   "awt/dtree/downscaling"
 
#define AWAR_DTREE_GROUP_SCALE   "awt/dtree/groupscaling"
 
#define AWAR_DTREE_AUTO_JUMP   "awt/dtree/autojump"
 
#define AWAR_DTREE_AUTO_JUMP_TREE   "awt/dtree/autojump_tree"
 
#define AWAR_DTREE_AUTO_UNFOLD   "awt/dtree/auto_unfold"
 
#define AWAR_DTREE_SHOW_BRACKETS   "awt/dtree/show_brackets"
 
#define AWAR_DTREE_GROUP_STYLE   "awt/dtree/groupstyle"
 
#define AWAR_DTREE_GROUP_ORIENT   "awt/dtree/grouporient"
 
#define AWAR_DTREE_GREY_LEVEL   "awt/dtree/greylevel"
 
#define AWAR_DTREE_GROUPCOUNTMODE   "awt/dtree/groupcountmode"
 
#define AWAR_DTREE_GROUPINFOPOS   "awt/dtree/groupinfopos"
 
#define AWAR_DTREE_BOOTSTRAP_MIN   "awt/dtree/bootstrap/min"
 
#define AWAR_DTREE_BOOTSTRAP_MAX   "awt/dtree/bootstrap/max"
 
#define AWAR_DTREE_BOOTSTRAP_SHOW   "awt/dtree/bootstrap/show"
 
#define AWAR_DTREE_BOOTSTRAP_STYLE   "awt/dtree/bootstrap/style"
 
#define AWAR_DTREE_CIRCLE_SHOW   "awt/dtree/bootstrap/circle/show"
 
#define AWAR_DTREE_CIRCLE_FILL   "awt/dtree/bootstrap/circle/fill"
 
#define AWAR_DTREE_CIRCLE_ELLIPSE   "awt/dtree/bootstrap/circle/ellipse"
 
#define AWAR_DTREE_CIRCLE_ZOOM   "awt/dtree/bootstrap/circle/zoom"
 
#define AWAR_DTREE_CIRCLE_LIMIT   "awt/dtree/bootstrap/circle/limit"
 
#define AWAR_DTREE_RADIAL_ZOOM_TEXT   "awt/dtree/radial/zoomtext"
 
#define AWAR_DTREE_RADIAL_XPAD   "awt/dtree/radial/xpadding"
 
#define AWAR_DTREE_DENDRO_ZOOM_TEXT   "awt/dtree/dendro/zoomtext"
 
#define AWAR_DTREE_DENDRO_XPAD   "awt/dtree/dendro/xpadding"
 
#define AWAR_DTREE_GROUP_MARKED_THRESHOLD   "awt/dtree/markers/group_marked_threshold"
 
#define AWAR_DTREE_GROUP_PARTIALLY_MARKED_THRESHOLD   "awt/dtree/markers/group_partially_marked_threshold"
 
#define AWAR_DTREE_MARKER_WIDTH   "awt/dtree/markers/marker_width"
 
#define AWAR_DTREE_PARTIAL_GREYLEVEL   "awt/dtree/markers/partial_greylevel"
 
#define NT_BOX_WIDTH   7
 
#define NT_DIAMOND_RADIUS   5
 
#define NT_ROOT_WIDTH   9
 
#define NT_SELECTED_WIDTH   11
 
#define AWT_TREE(ntw)   (ntw)->get_graphic_tree()
 

Typedefs

typedef void(* AD_map_viewer_cb )(GBDATA *gbd, AD_MAP_VIEWER_TYPE type)
 

Enumerations

enum  AP_tree_display_style {
  AP_TREE_NORMAL, AP_TREE_RADIAL, AP_TREE_IRS, AP_LIST_NDS,
  AP_LIST_SIMPLE
}
 
enum  AP_tree_jump_type {
  AP_JUMP_KEEP_VISIBLE = 1, AP_JUMP_LOGICAL_UNZOOM = 2, AP_JUMP_FORCE_VCENTER = 4, AP_JUMP_ALLOW_HCENTER = 8,
  AP_JUMP_FORCE_HCENTER = 16, AP_JUMP_BE_VERBOOSE = 32, AP_JUMP_AUTO_UNFOLD = 64, AP_DONT_JUMP = 0,
  AP_JUMP_SMART_CENTER = AP_JUMP_FORCE_VCENTER|AP_JUMP_ALLOW_HCENTER, AP_JUMP_FORCE_CENTER = AP_JUMP_FORCE_VCENTER|AP_JUMP_FORCE_HCENTER, AP_JUMP_BY_BUTTON = AP_JUMP_SMART_CENTER|AP_JUMP_LOGICAL_UNZOOM|AP_JUMP_AUTO_UNFOLD|AP_JUMP_BE_VERBOOSE
}
 
enum  AP_tree_jump_reason { AP_JUMP_REASON_TREE, AP_JUMP_REASON_STYLE, AP_JUMP_REASON_SPECIES, AP_JUMP_REASON_GROUP }
 
enum  ClickedType {
  CL_NODE = 1, CL_SPECIES, CL_RULER, CL_FLAG,
  CL_BRANCH, CL_ROOTNODE
}
 
enum  AD_MAP_VIEWER_TYPE { ADMVT_NONE = 0, ADMVT_INFO, ADMVT_WWW, ADMVT_SELECT }
 
enum  CollapseMode {
  COLLAPSE_ALL = 0, EXPAND_MARKED = 1, COLLAPSE_TERMINAL = 2, EXPAND_ALL = 4,
  EXPAND_COLOR = 8, EXPAND_ZOMBIES = 16, EXPAND_UNMARKED = 32
}
 
enum  GroupInfoMode { GI_COMBINED, GI_SEPARATED, GI_SEPARATED_PARENTIZED }
 
enum  GroupInfoPosition { GIP_SEPARATED, GIP_ATTACHED, GIP_OVERLAYED }
 
enum  GroupCountMode {
  GCM_NONE, GCM_MEMBERS, GCM_MARKED, GCM_BOTH,
  GCM_PERCENT, GCM_BOTH_PC
}
 
enum  BranchStyle { BS_RECTANGULAR, BS_DIAGONAL }
 
enum  GroupStyle { GS_TRAPEZE, GS_TRIANGLE }
 
enum  GroupOrientation { GO_TOP, GO_BOTTOM, GO_INTERIOR, GO_EXTERIOR }
 
enum  BootstrapStyle { BS_PERCENT, BS_PERCENT_NOSIGN, BS_FLOAT }
 

Functions

bool is_list_style (AP_tree_display_style style)
 
bool is_tree_style (AP_tree_display_style style)
 
 DECLARE_CBTYPE_FVV_AND_BUILDERS (GraphicTreeCallback, void, AWT_graphic_tree *)
 
 MARK_NONFINAL_CLASS (AWT_graphic_tree)
 
 MARK_NONFINAL_FUNCTION (AWT_graphic_tree, AP_tree_root *, create_tree_root,(AliView *, AP_sequence *, bool), NULp)
 
void TREE_create_awars (AW_root *aw_root, AW_default db)
 
void TREE_install_update_callbacks (TREE_canvas *ntw)
 
AW_window * TREE_create_settings_window (AW_root *aw_root)
 
AW_window * TREE_create_marker_settings_window (AW_root *root)
 
AWT_graphic_tree * NT_generate_tree (AW_root *root, GBDATA *gb_main, AD_map_viewer_cb map_viewer_cb)
 

Macro Definition Documentation

#define TREEDISP_STACKSIZE   (1024L*1024L*20)

Definition at line 32 of file TreeDisplay.hxx.

Referenced by ARB_main(), and pars_start_cb().

#define MAX_TREEDISP_RECURSION_DEPTH   20000

Definition at line 35 of file TreeDisplay.hxx.

#define TREEDISP_TRUNCATION_MESSAGE   "Warning: depth limit reached => subtree not shown (use logical zoom to workaround)"

Definition at line 36 of file TreeDisplay.hxx.

#define td_assert (   cond)    arb_assert(cond)

Definition at line 39 of file TreeDisplay.hxx.

Referenced by NodeMarkers::add(), TREE_canvas::at_screen_update_call(), AWT_graphic_tree::draw_branch_line(), NodeMarkers::incMarker(), NodeMarkers::markerCount(), MarkerDisplay::MarkerDisplay(), and AWT_graphic_tree::select_group().

#define AWAR_DTREE_BASELINEWIDTH   "awt/dtree/baselinewidth"

Definition at line 41 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_VERICAL_DIST   "awt/dtree/verticaldist"

Definition at line 42 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_BRANCH_STYLE   "awt/dtree/branch_style"

Definition at line 43 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_ATTACH_SIZE   "awt/dtree/attach_size"

Definition at line 44 of file TreeDisplay.hxx.

Referenced by create_tree_expert_settings_window(), AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_ATTACH_LEN   "awt/dtree/attach_len"

Definition at line 45 of file TreeDisplay.hxx.

Referenced by create_tree_expert_settings_window(), AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_ATTACH_GROUP   "awt/dtree/attach_group"

Definition at line 46 of file TreeDisplay.hxx.

Referenced by create_tree_expert_settings_window(), AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_GROUP_DOWNSCALE   "awt/dtree/downscaling"

Definition at line 47 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_GROUP_SCALE   "awt/dtree/groupscaling"

Definition at line 48 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_AUTO_JUMP   "awt/dtree/autojump"

Definition at line 49 of file TreeDisplay.hxx.

Referenced by TREE_auto_jump_cb(), TREE_create_awars(), and TREE_create_settings_window().

#define AWAR_DTREE_AUTO_JUMP_TREE   "awt/dtree/autojump_tree"

Definition at line 50 of file TreeDisplay.hxx.

Referenced by TREE_auto_jump_cb(), TREE_create_awars(), and TREE_create_settings_window().

#define AWAR_DTREE_AUTO_UNFOLD   "awt/dtree/auto_unfold"

Definition at line 51 of file TreeDisplay.hxx.

Referenced by TREE_auto_jump_cb(), TREE_create_awars(), and TREE_create_settings_window().

#define AWAR_DTREE_SHOW_BRACKETS   "awt/dtree/show_brackets"

Definition at line 52 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_GROUP_STYLE   "awt/dtree/groupstyle"

Definition at line 53 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_GROUP_ORIENT   "awt/dtree/grouporient"

Definition at line 54 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_GREY_LEVEL   "awt/dtree/greylevel"

Definition at line 55 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_GROUPCOUNTMODE   "awt/dtree/groupcountmode"

Definition at line 56 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_GROUPINFOPOS   "awt/dtree/groupinfopos"

Definition at line 57 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_BOOTSTRAP_MIN   "awt/dtree/bootstrap/min"

Definition at line 59 of file TreeDisplay.hxx.

Referenced by bootstrap_range_changed_cb(), create_tree_bootstrap_settings_window(), AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_BOOTSTRAP_MAX   "awt/dtree/bootstrap/max"

Definition at line 60 of file TreeDisplay.hxx.

Referenced by bootstrap_range_changed_cb(), create_tree_bootstrap_settings_window(), AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_BOOTSTRAP_SHOW   "awt/dtree/bootstrap/show"

Definition at line 61 of file TreeDisplay.hxx.

Referenced by create_tree_bootstrap_settings_window(), AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_BOOTSTRAP_STYLE   "awt/dtree/bootstrap/style"

Definition at line 62 of file TreeDisplay.hxx.

Referenced by create_tree_bootstrap_settings_window(), AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_CIRCLE_SHOW   "awt/dtree/bootstrap/circle/show"

Definition at line 63 of file TreeDisplay.hxx.

Referenced by create_tree_bootstrap_settings_window(), AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_CIRCLE_FILL   "awt/dtree/bootstrap/circle/fill"

Definition at line 64 of file TreeDisplay.hxx.

Referenced by create_tree_bootstrap_settings_window(), AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_CIRCLE_ELLIPSE   "awt/dtree/bootstrap/circle/ellipse"

Definition at line 65 of file TreeDisplay.hxx.

Referenced by create_tree_bootstrap_settings_window(), AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_CIRCLE_ZOOM   "awt/dtree/bootstrap/circle/zoom"

Definition at line 66 of file TreeDisplay.hxx.

Referenced by create_tree_bootstrap_settings_window(), AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_CIRCLE_LIMIT   "awt/dtree/bootstrap/circle/limit"

Definition at line 67 of file TreeDisplay.hxx.

Referenced by create_tree_bootstrap_settings_window(), AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_RADIAL_ZOOM_TEXT   "awt/dtree/radial/zoomtext"

Definition at line 69 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::apply_zoom_settings_for_treetype(), create_tree_expert_settings_window(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_RADIAL_XPAD   "awt/dtree/radial/xpadding"

Definition at line 70 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::apply_zoom_settings_for_treetype(), create_tree_expert_settings_window(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_DENDRO_ZOOM_TEXT   "awt/dtree/dendro/zoomtext"

Definition at line 72 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::apply_zoom_settings_for_treetype(), create_tree_expert_settings_window(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_DENDRO_XPAD   "awt/dtree/dendro/xpadding"

Definition at line 73 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::apply_zoom_settings_for_treetype(), create_tree_expert_settings_window(), TREE_create_awars(), and TREE_install_update_callbacks().

#define AWAR_DTREE_GROUP_MARKED_THRESHOLD   "awt/dtree/markers/group_marked_threshold"

Definition at line 75 of file TreeDisplay.hxx.

Referenced by create_probe_match_specificity_control_window(), markerThresholdChanged_cb(), AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_marker_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_GROUP_PARTIALLY_MARKED_THRESHOLD   "awt/dtree/markers/group_partially_marked_threshold"

Definition at line 76 of file TreeDisplay.hxx.

Referenced by create_probe_match_specificity_control_window(), markerThresholdChanged_cb(), AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_marker_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_MARKER_WIDTH   "awt/dtree/markers/marker_width"

Definition at line 77 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_marker_settings_window(), and TREE_install_update_callbacks().

#define AWAR_DTREE_PARTIAL_GREYLEVEL   "awt/dtree/markers/partial_greylevel"

Definition at line 78 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::read_tree_settings(), TREE_create_awars(), TREE_create_marker_settings_window(), and TREE_install_update_callbacks().

#define NT_BOX_WIDTH   7

Definition at line 80 of file TreeDisplay.hxx.

#define NT_DIAMOND_RADIUS   5

Definition at line 81 of file TreeDisplay.hxx.

#define NT_ROOT_WIDTH   9

Definition at line 82 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::show().

#define NT_SELECTED_WIDTH   11

Definition at line 83 of file TreeDisplay.hxx.

Referenced by AWT_graphic_tree::show().

#define AWT_TREE (   ntw)    (ntw)->get_graphic_tree()

Definition at line 85 of file TreeDisplay.hxx.

Referenced by group_and_refold_tree(), group_awar_changed_cb(), mark_nontree_cb(), mark_tree_cb(), MP_close_main(), MP_normal_colors_in_tree(), MP_show_probes_in_tree(), NT_bootstrap(), NT_edit_bootstrap(), NT_get_tree_root_of_canvas(), NT_jump_cb(), NT_justify_branch_lenghs(), NT_mark_duplicates(), NT_move_boot_branch(), NT_multifurcate_tree(), NT_pseudo_species_to_organism(), NT_reinit_treetype(), NT_remove_bootstrap(), NT_remove_leafs(), NT_reset_branchlengths(), NT_reset_lzoom_cb(), NT_resort_tree_cb(), NT_scale_tree(), NT_set_tree_style(), and NT_with_displayed_tree_do().

Typedef Documentation

typedef void(* AD_map_viewer_cb)(GBDATA *gbd, AD_MAP_VIEWER_TYPE type)

Definition at line 155 of file TreeDisplay.hxx.

Enumeration Type Documentation

enum AP_tree_display_style
Enumerator
AP_TREE_NORMAL 
AP_TREE_RADIAL 
AP_TREE_IRS 
AP_LIST_NDS 
AP_LIST_SIMPLE 

Definition at line 87 of file TreeDisplay.hxx.

enum AP_tree_jump_type
Enumerator
AP_JUMP_KEEP_VISIBLE 
AP_JUMP_LOGICAL_UNZOOM 
AP_JUMP_FORCE_VCENTER 
AP_JUMP_ALLOW_HCENTER 
AP_JUMP_FORCE_HCENTER 
AP_JUMP_BE_VERBOOSE 
AP_JUMP_AUTO_UNFOLD 
AP_DONT_JUMP 
AP_JUMP_SMART_CENTER 
AP_JUMP_FORCE_CENTER 
AP_JUMP_BY_BUTTON 

Definition at line 95 of file TreeDisplay.hxx.

enum AP_tree_jump_reason
Enumerator
AP_JUMP_REASON_TREE 
AP_JUMP_REASON_STYLE 
AP_JUMP_REASON_SPECIES 
AP_JUMP_REASON_GROUP 

Definition at line 112 of file TreeDisplay.hxx.

enum ClickedType
Enumerator
CL_NODE 
CL_SPECIES 
CL_RULER 
CL_FLAG 
CL_BRANCH 
CL_ROOTNODE 

Definition at line 119 of file TreeDisplay.hxx.

enum AD_MAP_VIEWER_TYPE
Enumerator
ADMVT_NONE 
ADMVT_INFO 
ADMVT_WWW 
ADMVT_SELECT 

Definition at line 148 of file TreeDisplay.hxx.

enum CollapseMode
Enumerator
COLLAPSE_ALL 
EXPAND_MARKED 
COLLAPSE_TERMINAL 
EXPAND_ALL 
EXPAND_COLOR 
EXPAND_ZOMBIES 
EXPAND_UNMARKED 

Definition at line 177 of file TreeDisplay.hxx.

enum GroupInfoMode
Enumerator
GI_COMBINED 
GI_SEPARATED 
GI_SEPARATED_PARENTIZED 

Definition at line 263 of file TreeDisplay.hxx.

enum GroupInfoPosition
Enumerator
GIP_SEPARATED 
GIP_ATTACHED 
GIP_OVERLAYED 

Definition at line 269 of file TreeDisplay.hxx.

enum GroupCountMode
Enumerator
GCM_NONE 
GCM_MEMBERS 
GCM_MARKED 
GCM_BOTH 
GCM_PERCENT 
GCM_BOTH_PC 

Definition at line 275 of file TreeDisplay.hxx.

enum BranchStyle
Enumerator
BS_RECTANGULAR 
BS_DIAGONAL 

Definition at line 284 of file TreeDisplay.hxx.

enum GroupStyle
Enumerator
GS_TRAPEZE 
GS_TRIANGLE 

Definition at line 289 of file TreeDisplay.hxx.

enum GroupOrientation
Enumerator
GO_TOP 
GO_BOTTOM 
GO_INTERIOR 
GO_EXTERIOR 

Definition at line 294 of file TreeDisplay.hxx.

enum BootstrapStyle
Enumerator
BS_PERCENT 
BS_PERCENT_NOSIGN 
BS_FLOAT 

Definition at line 320 of file TreeDisplay.hxx.

Function Documentation

bool is_list_style ( AP_tree_display_style  style)
inline

Definition at line 128 of file TreeDisplay.hxx.

References AP_LIST_NDS, and AP_LIST_SIMPLE.

Referenced by is_tree_style(), and AWT_graphic_tree::set_tree_style().

bool is_tree_style ( AP_tree_display_style  style)
inline

Definition at line 129 of file TreeDisplay.hxx.

References is_list_style().

Referenced by NT_jump_cb(), and AWT_graphic_tree::show().

DECLARE_CBTYPE_FVV_AND_BUILDERS ( GraphicTreeCallback  ,
void  ,
AWT_graphic_tree *   
)
MARK_NONFINAL_CLASS ( AWT_graphic_tree  )
MARK_NONFINAL_FUNCTION ( AWT_graphic_tree  ,
AP_tree_root *  ,
create_tree_root  ,
(AliView *, AP_sequence *, bool)  ,
NULp   
)
void TREE_create_awars ( AW_root *  aw_root,
AW_default  db 
)

Definition at line 3960 of file TreeDisplay.cxx.

References AP_JUMP_FORCE_VCENTER, AP_JUMP_KEEP_VISIBLE, AWAR_DTREE_ATTACH_GROUP, AWAR_DTREE_ATTACH_LEN, AWAR_DTREE_ATTACH_SIZE, AWAR_DTREE_AUTO_JUMP, AWAR_DTREE_AUTO_JUMP_TREE, AWAR_DTREE_AUTO_UNFOLD, AWAR_DTREE_BASELINEWIDTH, AWAR_DTREE_BOOTSTRAP_MAX, AWAR_DTREE_BOOTSTRAP_MIN, AWAR_DTREE_BOOTSTRAP_SHOW, AWAR_DTREE_BOOTSTRAP_STYLE, AWAR_DTREE_BRANCH_STYLE, AWAR_DTREE_CIRCLE_ELLIPSE, AWAR_DTREE_CIRCLE_FILL, AWAR_DTREE_CIRCLE_LIMIT, AWAR_DTREE_CIRCLE_SHOW, AWAR_DTREE_CIRCLE_ZOOM, AWAR_DTREE_DENDRO_XPAD, AWAR_DTREE_DENDRO_ZOOM_TEXT, AWAR_DTREE_GREY_LEVEL, AWAR_DTREE_GROUP_DOWNSCALE, AWAR_DTREE_GROUP_MARKED_THRESHOLD, AWAR_DTREE_GROUP_ORIENT, AWAR_DTREE_GROUP_PARTIALLY_MARKED_THRESHOLD, AWAR_DTREE_GROUP_SCALE, AWAR_DTREE_GROUP_STYLE, AWAR_DTREE_GROUPCOUNTMODE, AWAR_DTREE_GROUPINFOPOS, AWAR_DTREE_MARKER_WIDTH, AWAR_DTREE_PARTIAL_GREYLEVEL, AWAR_DTREE_RADIAL_XPAD, AWAR_DTREE_RADIAL_ZOOM_TEXT, AWAR_DTREE_SHOW_BRACKETS, AWAR_DTREE_VERICAL_DIST, AW_root::awar_float(), AW_root::awar_int(), AWAR_TREE_RECOMPUTE, AWAR_TREE_REFRESH, BS_PERCENT, BS_RECTANGULAR, GCM_MEMBERS, GIP_SEPARATED, GO_TOP, GS_TRAPEZE, and AW_awar::set_minmax().

Referenced by nt_create_all_awars(), and pars_create_all_awars().

void TREE_install_update_callbacks ( TREE_canvas *  ntw)

Definition at line 4049 of file TreeDisplay.cxx.

References AW_awar::add_callback(), AP_JUMP_REASON_SPECIES, AW_root::awar(), AWAR_DTREE_ATTACH_GROUP, AWAR_DTREE_ATTACH_LEN, AWAR_DTREE_ATTACH_SIZE, AWAR_DTREE_BASELINEWIDTH, AWAR_DTREE_BOOTSTRAP_MAX, AWAR_DTREE_BOOTSTRAP_MIN, AWAR_DTREE_BOOTSTRAP_SHOW, AWAR_DTREE_BOOTSTRAP_STYLE, AWAR_DTREE_BRANCH_STYLE, AWAR_DTREE_CIRCLE_ELLIPSE, AWAR_DTREE_CIRCLE_FILL, AWAR_DTREE_CIRCLE_LIMIT, AWAR_DTREE_CIRCLE_SHOW, AWAR_DTREE_CIRCLE_ZOOM, AWAR_DTREE_DENDRO_XPAD, AWAR_DTREE_DENDRO_ZOOM_TEXT, AWAR_DTREE_GREY_LEVEL, AWAR_DTREE_GROUP_DOWNSCALE, AWAR_DTREE_GROUP_MARKED_THRESHOLD, AWAR_DTREE_GROUP_ORIENT, AWAR_DTREE_GROUP_PARTIALLY_MARKED_THRESHOLD, AWAR_DTREE_GROUP_SCALE, AWAR_DTREE_GROUP_STYLE, AWAR_DTREE_GROUPCOUNTMODE, AWAR_DTREE_GROUPINFOPOS, AWAR_DTREE_MARKER_WIDTH, AWAR_DTREE_PARTIAL_GREYLEVEL, AWAR_DTREE_RADIAL_XPAD, AWAR_DTREE_RADIAL_ZOOM_TEXT, AWAR_DTREE_SHOW_BRACKETS, AWAR_DTREE_VERICAL_DIST, AWAR_SPECIES_NAME, AWAR_TREE_RECOMPUTE, AWAR_TREE_REFRESH, AWT_canvas::awr, AWT_expose_cb(), bootstrap_range_changed_cb(), expose_cb(), GB_add_callback(), GB_CB_CHANGED, GB_CREATE_CONTAINER, AWT_canvas::gb_main, GB_search(), markerThresholdChanged_cb(), NT_reinit_treetype(), resize_cb(), TREE_auto_jump_cb(), TREE_recompute_and_resize_cb(), and TREE_resize_cb().

Referenced by pars_start_cb(), and popup_new_main_window().

AW_window* TREE_create_settings_window ( AW_root *  aw_root)

Definition at line 4289 of file TreeDisplay.cxx.

References AW_POPDOWN(), AW_ROOT_DEFAULT, AW_SCALER_EXP_LOWER, AWAR_DTREE_AUTO_JUMP, AWAR_DTREE_AUTO_JUMP_TREE, AWAR_DTREE_AUTO_UNFOLD, AWAR_DTREE_BASELINEWIDTH, AWAR_DTREE_BOOTSTRAP_SHOW, AWAR_DTREE_BRANCH_STYLE, AWAR_DTREE_GREY_LEVEL, AWAR_DTREE_GROUP_DOWNSCALE, AWAR_DTREE_GROUP_ORIENT, AWAR_DTREE_GROUP_SCALE, AWAR_DTREE_GROUP_STYLE, AWAR_DTREE_GROUPCOUNTMODE, AWAR_DTREE_GROUPINFOPOS, AWAR_DTREE_SHOW_BRACKETS, AWAR_DTREE_VERICAL_DIST, AWT_insert_config_manager(), BS_DIAGONAL, BS_RECTANGULAR, create_tree_bootstrap_settings_window(), create_tree_expert_settings_window(), GCM_BOTH, GCM_BOTH_PC, GCM_MARKED, GCM_MEMBERS, GCM_NONE, GCM_PERCENT, GIP_ATTACHED, GIP_OVERLAYED, GIP_SEPARATED, GO_BOTTOM, GO_EXTERIOR, GO_INTERIOR, GO_TOP, GS_TRAPEZE, GS_TRIANGLE, insert_section_header(), makeHelpCallback(), NULp, and tree_insert_jump_option_menu().

Referenced by pars_start_cb(), and popup_new_main_window().

AW_window* TREE_create_marker_settings_window ( AW_root *  root)

Definition at line 4408 of file TreeDisplay.cxx.

References AW_POPDOWN(), AWAR_DTREE_GROUP_MARKED_THRESHOLD, AWAR_DTREE_GROUP_PARTIALLY_MARKED_THRESHOLD, AWAR_DTREE_MARKER_WIDTH, AWAR_DTREE_PARTIAL_GREYLEVEL, makeHelpCallback(), and NULp.

Referenced by create_configuration_marker_window(), and create_probe_match_specificity_control_window().

AWT_graphic_tree* NT_generate_tree ( AW_root *  root,
GBDATA *  gb_main,
AD_map_viewer_cb  map_viewer_cb 
)

Definition at line 3931 of file TreeDisplay.cxx.

References AWT_graphic_tree::init(), and NULp.

Referenced by popup_new_main_window().

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