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Macros | |
| #define | RNA 0 |
| #define | NONRNA 1 |
| #define | AUTHOR 1 |
| #define | JOURNAL 2 |
| #define | TITLE 3 |
| #define | STANDARD 4 |
| #define | PROCESS 5 |
| #define | ALL 0 |
| #define | SEQLINE 60 |
| #define | LINESIZE 126 |
| #define | LONGTEXT 5000 |
| #define | TOKENSIZE 80 |
| #define | EMBLMAXLINE 74 |
| #define | GBMAXLINE 78 |
| #define | MACKEMAXLINE 78 |
| #define | EMBLINDENT 5 |
| #define | GBINDENT 12 |
| #define | RDP_SUBKEY_INDENT 2 |
| #define | RDP_CONTINUED_INDENT 6 |
| #define | p_nonkey_start 5 |
Enumerations | |
| enum | EntryState { ENTRY_NONE, ENTRY_STARTED, ENTRY_COMPLETED } |
Macro Definition Documentation
| #define SEQLINE 60 |
Definition at line 14 of file defs.h.
Referenced by paup_print_line(), phylip_print_line(), to_paup(), and to_phylip().
| #define LINESIZE 126 |
Definition at line 16 of file defs.h.
Referenced by ask_for_conversion_params(), embl_continue_line(), embl_one_comment_entry(), embl_print_comment_if_content(), genbank_continue_line(), genbank_print_comment_if_content(), macke_print_keyword_rem(), macke_print_prefixed_line(), macke_read_seq(), GcgCommentWriter::out(), Writer::outf(), and Reader::set_line().
| #define LONGTEXT 5000 |
Definition at line 17 of file defs.h.
Referenced by copy_strain_and_check_consistency(), copy_subspecies_and_check_consistency(), etog(), etog_convert_references(), genbank_get_atcc(), genbank_get_strain(), genbank_get_subspecies(), get_atcc(), gtoe(), gtom(), and mtog().
| #define TOKENSIZE 80 |
Definition at line 18 of file defs.h.
Referenced by embl_comments(), embl_continue_line(), embl_date(), embl_print_lines(), embl_skip_unidentified(), etog(), etog_author(), etog_journal(), genbank_comments(), genbank_out_one_reference(), genbank_reference(), genbank_source(), EmblSwissprotReader::get_key_word(), GenbankReader::get_key_word(), gtoe(), gtoe_journal(), gtoe_reference(), gtom(), macke_continue_line(), macke_is_genbank_entry_comment(), macke_read_seq(), mtog_decode_ref_and_remarks(), parse_key_word(), parse_RDP_comment(), EmblParser::parse_section(), GenbankParser::parse_section(), and paup_verify_name().
| #define EMBLMAXLINE 74 |
Definition at line 21 of file defs.h.
Referenced by embl_print_comment_if_content(), and embl_print_lines().
| #define GBMAXLINE 78 |
Definition at line 22 of file defs.h.
Referenced by genbank_print_comment_if_content(), and genbank_print_lines().
| #define MACKEMAXLINE 78 |
Definition at line 23 of file defs.h.
Referenced by macke_print_keyword_rem(), and macke_print_line().
| #define EMBLINDENT 5 |
Definition at line 26 of file defs.h.
Referenced by embl_print_comment_if_content(), and embl_print_lines().
| #define GBINDENT 12 |
Definition at line 27 of file defs.h.
Referenced by genbank_comments(), genbank_key_word(), genbank_one_entry_in(), genbank_out_header(), genbank_print_comment_if_content(), genbank_print_lines(), genbank_reference(), and genbank_source().
| #define RDP_SUBKEY_INDENT 2 |
Definition at line 30 of file defs.h.
Referenced by embl_one_comment_entry(), embl_print_comment_if_content(), genbank_print_comment_if_content(), and macke_print_keyword_rem().
| #define RDP_CONTINUED_INDENT 6 |
Definition at line 31 of file defs.h.
Referenced by embl_one_comment_entry(), embl_print_comment_if_content(), and genbank_print_comment_if_content().
| #define p_nonkey_start 5 |
Definition at line 33 of file defs.h.
Referenced by embl_continue_line(), embl_date(), embl_one_comment_entry(), and embl_one_entry().
Enumeration Type Documentation
| enum EntryState |
