#include "gb_key.h"
#include "gb_map.h"
#include "gb_index.h"
#include <arb_file.h>

Include dependency graph for admap.cxx:

Classes
struct	gbdata_offset

struct	gbdByKey

Macros
#define	ADMAP_BYTE_ORDER 0x01020304

#define	GB_MAX_MAPPED_FILES 10

#define	ALIGN_BITS 2

#define	ALIGN(size) (((((size)-1)>>ALIGN_BITS)+1)<<ALIGN_BITS)

#define	PTR_DIFF(p1, p2) ((char)(p1)-(char)(p2))

#define	cmp(h1, h2) ((long)(h1).gbd - (long)(h2).gbd)

#define	swap(h1, h2)

Functions
long	MAKEREL (long rel_to, long offset)

static void	downheap (gbdata_offset *heap, int idx, int num)

static void	sort_gbdata_offsets (gbdata_offset *gbdo, int num)

static gbdata_offset *	find_gbdata_offset (GBQUARK quark, GBDATA *gbd)

static long	getrel_GBDATA (long rel_to, GBDATA *gbd)

static void	ftwrite_aligned (const void ptr, size_t ali_siz, FILE fil)

static size_t	ftwrite_unaligned (const void ptr, size_t unali_siz, FILE fil)

static long	write_IE (gb_if_entries ie, FILE out, long *offset)

static long	write_IFS (gb_index_files ifs, FILE out, long *offset)

static void	convertFlags4Save (gb_flag_types flags, gb_flag_types2 flags2, gb_flag_types3 *)

static long	write_GBDATA (GB_MAIN_TYPE , GBDATA gbd, GBQUARK quark, FILE out, long offset, GB_MAIN_IDX main_idx)

static long	writeGbdByKey (GB_MAIN_TYPE Main, gbdByKey gbk, FILE *out, GB_MAIN_IDX main_idx)

static long	calcGbdOffsets (GB_MAIN_TYPE Main, gbdByKey gbk)

static void	scanGbdByKey (GB_MAIN_TYPE Main, GBDATA gbd, gbdByKey *gbk)

static gbdByKey *	createGbdByKey (GB_MAIN_TYPE *Main)

static void	freeGbdByKey (GB_MAIN_TYPE Main, gbdByKey gbk)

GB_ERROR	gb_save_mapfile (GB_MAIN_TYPE *Main, GB_CSTR path)

bool	GB_supports_mapfile ()

int	gb_is_valid_mapfile (const char path, gb_map_header mheader, int verbose)

GBDATA *	gb_map_mapfile (const char *path)

int	gb_isMappedMemory (void *mem)

Variables
static gbdByKey *	gb_gbk = NULp

static bool	writeError

static char	alignment_bytes [ALIGN(1)] = { 0 }

static char *	fileMappedTo [GB_MAX_MAPPED_FILES]

static long	fileLen [GB_MAX_MAPPED_FILES]

static int	mappedFiles = 0

Macro Definition Documentation

#define ADMAP_BYTE_ORDER 0x01020304

Definition at line 16 of file admap.cxx.

Referenced by gb_is_valid_mapfile(), and gb_save_mapfile().

#define GB_MAX_MAPPED_FILES 10

Definition at line 17 of file admap.cxx.

Referenced by gb_map_mapfile().

#define ALIGN_BITS 2

Definition at line 22 of file admap.cxx.

#define ALIGN ( size ) (((((size)-1)>>ALIGN_BITS)+1)<<ALIGN_BITS)

Definition at line 25 of file admap.cxx.

Referenced by calcGbdOffsets(), ftwrite_aligned(), ftwrite_unaligned(), write_GBDATA(), write_IE(), write_IFS(), and writeGbdByKey().

#define PTR_DIFF	(	p1,
		p2
	)	((char)(p1)-(char)(p2))

Definition at line 26 of file admap.cxx.

Referenced by write_GBDATA().

#define cmp	(	h1,
		h2
	)	((long)(h1).gbd - (long)(h2).gbd)

Definition at line 50 of file admap.cxx.

Referenced by an_stricmp(), an_strnicmp(), ARB_stricmp(), cannot_fast_align(), FamilyStat::cmp_abs(), FINAL_TYPE< SEQTYPE >::cmp_data(), cmp_location_parts(), FamilyStat::cmp_rel(), AliData::cmp_whole_data(), cmpByKey(), TextRef::compare(), compare_hits(), AW_window::create_user_geometry_awars(), downheap(), GBT_TREE_order(), TextRef::icompare(), PART::insertionOrder_cmp(), PartitionSpec::isBetterThan(), ProbeOccurrence::less(), matchesUsingWildcard(), numeric_string_cmp(), SpecificGap< T >::operate_on_mem(), SpecificAliData< char >::operate_on_mem(), lt_field::operator()(), cmp_Rectangles::operator()(), ColorMap::operator()(), BadPositionsOrder::operator()(), ltByArbName::operator()(), ltByInternalName::operator()(), compare_by_criteria::operator()(), GEN_gene::operator<(), operator<(), pt_sort_compare_match(), ptnd_compare_quality(), RB_INFO_order(), resort_data_by_customOrder(), AW_selection_list::sort(), sort_gbdata_offsets(), sort_sequences_by_length(), strcasecmp_start(), and PART::topological_cmp().

#define swap	(	h1,
		h2
	)

Value:

do {                                    \
        gbdata_offset xxx = (h1);           \
        (h1) = (h2);                        \
        (h2) = xxx;                         \
    } while (0)

Definition at line 52 of file admap.cxx.

Referenced by downheap().