Go to the source code of this file.
Classes | |
| class | AP_TreeShader |
Macros | |
| #define | ap_assert(cond) arb_assert(cond) |
Macro Definition Documentation
| #define ap_assert | ( | cond | ) | arb_assert(cond) |
Definition at line 24 of file AP_TreeShader.hxx.
Referenced by AP_main::accept(), StackFrameData::accept_resources(), NodeStack::accept_resources(), AP_sequence::bind_to_species(), AP_tree::buildLeafList(), AP_TreeShader::calc_inner_GC(), AP_TreeShader::calc_leaf_GC(), calc_steps(), AP_tree_root::change_root(), AP_tree::compute_tree(), MutationsPerSite::data(), AP_tree_edge::destroy(), AP_main::destroyEdge(), AP_main::destroyNode(), AP_sequence::do_lazy_load(), PartialSequence::dump(), OptiPerfMeter::dumpCustom(), EdgeChain::EdgeChain(), AP_subtree::edgeToSubtree(), AP_main::get_gb_main(), PARSIMONY_testenv< SEQTYPE >::get_KL_settings(), PartialSequence::get_multilist(), PartialSequence::get_name(), LongBranchMarker::get_report(), FINAL_TYPE< SEQTYPE >::get_sequence(), ResourceStack::getEdge(), ResourceStack::getNode(), AP_tree_edge::indexOf(), AP_tree::initial_insert(), AP_tree::insert(), insert_all_species_into_tree(), insert_species_into_tree(), ArbParsimony::kernighan_optimize_tree(), AP_tree_edge::kl_rec(), PARSIMONY_testenv< SEQTYPE >::load_tree(), AP_tree_edge::mixTree(), AP_tree::move_group_to(), NodeState::move_info_to(), AP_tree::moveNextTo(), AP_tree_edge::nni_mutPerSite(), AP_tree_edge::nni_rec(), nt_add(), nt_add_partial(), nt_reAdd(), EdgeChain::operator++(), ArbParsimony::optimize_tree(), pars_check_size(), PARS_tree_init(), PartialSequence::PartialSequence(), AP_main::push_node(), QuadraticThreshold::QuadraticThreshold(), AP_tree::recompute_and_write_folding(), AP_tree_edge::relink(), AP_main::remember(), AP_tree::REMOVE(), AP_main::revert(), NodeStack::revert_resources(), PARSIMONY_testenv< SEQTYPE >::root_node(), AP_tree_root::saveToDB(), set_extract_common(), ArbParsimony::set_tree(), AP_main::set_tree_root(), AP_subtree::setSubtreeRoot(), sort_sequences_by_length(), AP_tree::swap_sons(), AP_STACK< AP_tree_nlen >::top(), AP_sequence::unbind_from_species(), AP_tree_edge::unlink(), update_min_mutations(), AP_tree::update_subtree_information(), update_undefined_leaf_branchlength(), AP_main::~AP_main(), FINAL_TYPE< SEQTYPE >::~AP_tree_nlen(), AP_tree_root::~AP_tree_root(), NodeStack::~NodeStack(), PARSIMONY_testenv< SEQTYPE >::~PARSIMONY_testenv(), PartialSequence::~PartialSequence(), and ResourceStack::~ResourceStack().
