ARB
Classes | Typedefs | Enumerations | Functions
ap_tree_nlen.hxx File Reference
#include <iostream>
#include <climits>
#include <arbdb_base.h>
#include <AP_Tree.hxx>
#include "AP_buffer.hxx"
#include "ap_main_type.hxx"
#include "pars_awars.h"
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Classes

class  QuadraticThreshold
 
struct  KL_params
 
class  FINAL_TYPE< SEQTYPE >
 xml element More...
 
class  FINAL_TYPE< SEQTYPE >
 xml element More...
 
class  AP_tree_edge
 
class  EdgeChain
 

Typedefs

typedef uint8_t EdgeIndex
 

Enumerations

enum  KL_RECURSION_TYPE { AP_NO_REDUCTION = 0, AP_DYNAMIK = 1, AP_STATIC = 2 }
 
enum  AP_BL_MODE {
  APBL_NONE = 0, AP_BL_NNI_ONLY = 1, AP_BL_BL_ONLY = 2, AP_BL_BOOTSTRAP_LIMIT = 4,
  AP_BL_BOOTSTRAP_ESTIMATE = 12
}
 
enum  AP_TREE_SIDE { AP_LEFT, AP_RIGHT }
 

Functions

bool allBranchlengthsAreDefined (AP_tree_nlen *tree)
 
std::ostream & operator<< (std::ostream &, const AP_tree_edge *)
 

Typedef Documentation

typedef uint8_t EdgeIndex

Definition at line 106 of file ap_tree_nlen.hxx.

Enumeration Type Documentation

Enumerator
AP_NO_REDUCTION 
AP_DYNAMIK 
AP_STATIC 

Definition at line 39 of file ap_tree_nlen.hxx.

enum AP_BL_MODE
Enumerator
APBL_NONE 
AP_BL_NNI_ONLY 
AP_BL_BL_ONLY 
AP_BL_BOOTSTRAP_LIMIT 
AP_BL_BOOTSTRAP_ESTIMATE 

Definition at line 74 of file ap_tree_nlen.hxx.

Enumerator
AP_LEFT 
AP_RIGHT 

Definition at line 82 of file ap_tree_nlen.hxx.

Function Documentation

bool allBranchlengthsAreDefined ( AP_tree_nlen *  tree)
std::ostream& operator<< ( std::ostream &  ,
const AP_tree_edge  
)

Definition at line 572 of file AP_tree_edge.cxx.