#include <iostream>#include <climits>#include <arbdb_base.h>#include <AP_Tree.hxx>#include "AP_buffer.hxx"#include "ap_main_type.hxx"#include "pars_awars.h"
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Classes | |
| class | QuadraticThreshold |
| struct | KL_params |
| class | FINAL_TYPE< SEQTYPE > |
| xml element More... | |
| class | FINAL_TYPE< SEQTYPE > |
| xml element More... | |
| class | AP_tree_edge |
| class | EdgeChain |
Typedefs | |
| typedef uint8_t | EdgeIndex |
Enumerations | |
| enum | KL_RECURSION_TYPE { AP_NO_REDUCTION = 0, AP_DYNAMIK = 1, AP_STATIC = 2 } |
| enum | AP_BL_MODE { APBL_NONE = 0, AP_BL_NNI_ONLY = 1, AP_BL_BL_ONLY = 2, AP_BL_BOOTSTRAP_LIMIT = 4, AP_BL_BOOTSTRAP_ESTIMATE = 12 } |
| enum | AP_TREE_SIDE { AP_LEFT, AP_RIGHT } |
Functions | |
| bool | allBranchlengthsAreDefined (AP_tree_nlen *tree) |
| std::ostream & | operator<< (std::ostream &, const AP_tree_edge *) |
Typedef Documentation
| typedef uint8_t EdgeIndex |
Definition at line 106 of file ap_tree_nlen.hxx.
Enumeration Type Documentation
| enum KL_RECURSION_TYPE |
| Enumerator | |
|---|---|
| AP_NO_REDUCTION | |
| AP_DYNAMIK | |
| AP_STATIC | |
Definition at line 39 of file ap_tree_nlen.hxx.
| enum AP_BL_MODE |
| Enumerator | |
|---|---|
| APBL_NONE | |
| AP_BL_NNI_ONLY | |
| AP_BL_BL_ONLY | |
| AP_BL_BOOTSTRAP_LIMIT | |
| AP_BL_BOOTSTRAP_ESTIMATE | |
Definition at line 74 of file ap_tree_nlen.hxx.
| enum AP_TREE_SIDE |
| Enumerator | |
|---|---|
| AP_LEFT | |
| AP_RIGHT | |
Definition at line 82 of file ap_tree_nlen.hxx.
Function Documentation
| bool allBranchlengthsAreDefined | ( | AP_tree_nlen * | tree | ) |
Definition at line 420 of file AP_tree_edge.cxx.
References allBranchlengthsAreDefined(), and AP_UNDEF_BL.
Referenced by allBranchlengthsAreDefined(), and AP_tree_edge::nni_rec().
| std::ostream& operator<< | ( | std::ostream & | , |
| const AP_tree_edge * | |||
| ) |
Definition at line 572 of file AP_tree_edge.cxx.
