NT_taxonomy.cxx File Reference

#include "ad_trees.h"
#include "NT_local.h"
#include <aw_window.hxx>
#include <aw_root.hxx>
#include <aw_awar.hxx>
#include <aw_msg.hxx>
#include <awt_sel_boxes.hxx>
#include <TreeCallbacks.hxx>
#include <TreeAdmin.h>
#include <arb_progress.h>
#include <arb_global_defs.h>
#include <item_sel_list.h>
#include <set>
#include <map>

Include dependency graph for NT_taxonomy.cxx:

Go to the source code of this file.

Classes
class	SpeciesInTwoTrees

Macros
#define	TREE_COMPARE_PREFIX   "ad_tree/compare/"
#define	AWAR_TREE_COMPARE_ACTION   TREE_COMPARE_PREFIX "action"
#define	AWAR_TREE_COMPARE_MIN_TAX_LEVELS   TREE_COMPARE_PREFIX "taxdist"
#define	AWAR_TREE_COMPARE_WRITE_FIELD   TREE_COMPARE_PREFIX "field"

Typedefs
typedef std::set< const char *, charpLess >	NameSet
typedef std::map< const char *, SpeciesInTwoTrees, charpLess >	TwoTreeMap

Enumerations
enum	Action { UNMARK = 0, MARK = 1, INVERT = 2 }
enum	Target {   ALL, TAX, COMMON, MISSING_LEFT,   MISSING_RIGHT }

Functions
static TreeNode *	findParentGroup (TreeNode *node)
static int	countTaxLevel (TreeNode *node)
static int	calcTaxDifference (TreeNode *g1, TreeNode *g2)
static void	mapTree (TreeNode *node, TwoTreeMap &tmap, bool first)
static void	mark_action (AW_window *aws, TREE_canvas *ntw, Target target)
void	NT_create_compare_taxonomy_awars (AW_root *aw_root, AW_default props)
AW_window *	NT_create_compare_taxonomy_window (AW_root *aw_root, TREE_canvas *ntw)

Macro Definition Documentation

#define TREE_COMPARE_PREFIX   "ad_tree/compare/"

Definition at line 30 of file NT_taxonomy.cxx.

#define AWAR_TREE_COMPARE_ACTION   TREE_COMPARE_PREFIX "action"

Definition at line 32 of file NT_taxonomy.cxx.

Referenced by mark_action(), NT_create_compare_taxonomy_awars(), and NT_create_compare_taxonomy_window().

#define AWAR_TREE_COMPARE_MIN_TAX_LEVELS   TREE_COMPARE_PREFIX "taxdist"

Definition at line 33 of file NT_taxonomy.cxx.

Referenced by mark_action(), NT_create_compare_taxonomy_awars(), and NT_create_compare_taxonomy_window().

#define AWAR_TREE_COMPARE_WRITE_FIELD   TREE_COMPARE_PREFIX "field"

Definition at line 34 of file NT_taxonomy.cxx.

Referenced by mark_action(), NT_create_compare_taxonomy_awars(), and NT_create_compare_taxonomy_window().

Typedef Documentation

typedef std::set<const char *, charpLess> NameSet

Definition at line 171 of file NT_taxonomy.cxx.

typedef std::map<const char *, SpeciesInTwoTrees, charpLess> TwoTreeMap

Definition at line 172 of file NT_taxonomy.cxx.

Enumeration Type Documentation

enum Action

Enumerator
UNMARK
MARK
INVERT

Definition at line 36 of file NT_taxonomy.cxx.

enum Target

Enumerator
ALL
TAX
COMMON
MISSING_LEFT
MISSING_RIGHT

Definition at line 42 of file NT_taxonomy.cxx.

Function Documentation

static TreeNode* findParentGroup ( TreeNode *  node )

static

Definition at line 50 of file NT_taxonomy.cxx.

References TreeNode::father, TreeNode::is_normal_group(), and NULp.

Referenced by calcTaxDifference(), SpeciesInTwoTrees::calcTaxDiffLevel(), and countTaxLevel().

static int countTaxLevel ( TreeNode *  node )

static

Definition at line 63 of file NT_taxonomy.cxx.

References findParentGroup(), TreeNode::is_leaf(), and TreeNode::is_normal_group().

Referenced by SpeciesInTwoTrees::calcTaxDiffLevel().

static int calcTaxDifference ( TreeNode *  g1, TreeNode *  g2  )

static

Definition at line 73 of file NT_taxonomy.cxx.

References findParentGroup(), TreeNode::is_normal_group(), min, TreeNode::name, and nt_assert.

Referenced by SpeciesInTwoTrees::calcTaxDiffLevel().

static void mapTree ( TreeNode *  node, TwoTreeMap &  tmap, bool  first  )

static

Definition at line 174 of file NT_taxonomy.cxx.

References TreeNode::is_leaf(), TreeNode::leftson, TreeNode::name, nt_assert, and TreeNode::rightson.

Referenced by mark_action().

static void mark_action ( AW_window *  aws, TREE_canvas *  ntw, Target  target  )

static

Definition at line 185 of file NT_taxonomy.cxx.

References ALL, aw_message(), aw_message_if(), AW_root::awar(), AWAR_TREE_COMPARE_ACTION, AWAR_TREE_COMPARE_MIN_TAX_LEVELS, AWAR_TREE_COMPARE_WRITE_FIELD, SpeciesInTwoTrees::calcTaxDiffLevel(), COMMON, TreeAdmin::dest_tree_awar(), destroy(), error(), FIF_ALLOW_NONE, GB_await_error(), GB_incur_error(), gb_main, AWT_canvas::gb_main, GB_read_flag(), gb_species_data, GB_write_flag(), GB_write_lossless_int(), GBS_global_string(), GBT_find_species_rel_species_data(), GBT_get_names_of_species_in_tree(), GBT_get_species_data(), GBT_read_tree(), GBT_searchOrCreate_itemfield_according_to_changekey(), AW_window::get_root(), arb_progress::inc_and_check_user_abort(), INVERT, mapTree(), MARK, MISSING_LEFT, nt_assert, NT_mark_all_cb(), NULp, SpeciesInTwoTrees::occursInBothTrees(), prepare_and_get_selected_itemfield(), AW_awar::read_char_pntr(), AW_awar::read_int(), s, TreeAdmin::source_tree_awar(), SPECIES_get_selector(), ta, TAX, and UNMARK.

Referenced by NT_create_compare_taxonomy_window().

void NT_create_compare_taxonomy_awars	(	AW_root *	aw_root,
		AW_default	props
	)

Definition at line 335 of file NT_taxonomy.cxx.

References AW_root::awar(), AW_root::awar_int(), AW_root::awar_string(), AWAR_TREE_COMPARE_ACTION, AWAR_TREE_COMPARE_MIN_TAX_LEVELS, AWAR_TREE_COMPARE_WRITE_FIELD, AWAR_TREE_NAME, MARK, NO_FIELD_SELECTED, and AW_awar::read_string().

Referenced by nt_create_all_awars().

AW_window* NT_create_compare_taxonomy_window	(	AW_root *	aw_root,
		TREE_canvas *	ntw
	)

Definition at line 345 of file NT_taxonomy.cxx.

References ALL, AW_POPDOWN(), AWAR_TREE_COMPARE_ACTION, AWAR_TREE_COMPARE_MIN_TAX_LEVELS, AWAR_TREE_COMPARE_WRITE_FIELD, COMMON, create_itemfield_selection_button(), FIELD_FILTER_INT_WRITEABLE, AWT_canvas::gb_main, INVERT, AW_window::load_xfig(), makeHelpCallback(), MARK, mark_action(), MISSING_LEFT, MISSING_RIGHT, NT_create_twoTreeSelection(), SF_ALLOW_NEW, SPECIES_get_selector(), TAX, and UNMARK.

Referenced by popup_new_main_window().