#include <cstdlib>
#include <cstring>
#include <attributes.h>

Include dependency graph for arb_mem.h:

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Namespaces
	arb_mem

Functions
void	arb_mem::failed_to_allocate (const char *reason) __ATTR__NORETURN

void	arb_mem::failed_to_allocate (size_t nelem, size_t elsize) __ATTR__NORETURN

void	arb_mem::failed_to_allocate (size_t size) __ATTR__NORETURN

void	arb_mem::alloc_aligned (void **tgt, size_t alignment, size_t len)

template<class TYPE >
void	ARB_alloc_aligned (TYPE *&tgt, size_t nelems)

template<class TYPE >
void	ARB_realloc (TYPE *&tgt, size_t nelem)

template<class TYPE >
void	ARB_recalloc (TYPE *&tgt, size_t oelem, size_t nelem)

template<class TYPE >
TYPE *	ARB_alloc (size_t nelem)

template<class TYPE >
void	ARB_alloc (TYPE *&tgt, size_t nelem)

template<class TYPE >
TYPE *	ARB_calloc (size_t nelem)

template<class TYPE >
void	ARB_calloc (TYPE *&tgt, size_t nelem)

Function Documentation

template<class TYPE >

void ARB_alloc_aligned	(	TYPE *&	tgt,
		size_t	nelems
	)

inline

allocate 16 byte aligned memory (terminate on failure)

Definition at line 37 of file arb_mem.h.

References arb_mem::alloc_aligned().

Referenced by AP_weights::AP_weights().

template<class TYPE >

void ARB_realloc	(	TYPE *&	tgt,
		size_t	nelem
	)

inline

reallocate memoryblock to fit 'nelem' entries (terminate on failure)

Definition at line 43 of file arb_mem.h.

References arb_mem::failed_to_allocate().

Referenced by Seq::add(), AW_window::alloc_named_data_color(), append_known_len(), AppendNA(), ARB_recalloc(), Arbdb_get_curelem(), etog_journal(), format(), GB_log_fak(), DI_MATRIX::load(), ParseMenus(), and ReadGen().

template<class TYPE >

void ARB_recalloc	(	TYPE *&	tgt,
		size_t	oelem,
		size_t	nelem
	)

inline

reallocate memoryblock to fit 'nelem' entries (partially cleared if 'oelem<nelem'; terminate on failure)

Definition at line 49 of file arb_mem.h.

References ARB_realloc().

Referenced by AW_GC_set::add_gc(), gb_local_data::announce_db_open(), ED4_create_sequences_for_gde(), gb_create_key_array(), ParseMenus(), ReadGen(), set_and_realloc_gde_array(), and CharPtrArray::set_space().

template<class TYPE >

TYPE* ARB_alloc ( size_t nelem )

inline

malloc memory for an array of 'nelem' instances of TYPE (terminates on failure).

1 int *p = ARB_alloc<int>(7); // allocates space for 7 int

See also: ARB_alloc

Definition at line 56 of file arb_mem.h.

References arb_mem::failed_to_allocate().

Referenced by alloc_buffer(), AW_window::alloc_named_data_color(), arb_start_server(), ARB_strduplen(), ARB_strpartdup(), Arbdb_get_curelem(), aw_insert_message_in_tmp_message_delayed(), AWTC_create_numbered_suffix(), dot_missing_bases(), gb_alloc_cache_index(), GB_DbScanner::GB_DbScanner(), GB_get_GBDATA_path(), GB_get_subfields(), gb_local_data::gb_local_data(), GBK_assert_msg(), GBT_gen_species_array(), GBT_read_gene_sequence_and_length(), Pair::get_primers(), Pair::get_result(), Item::getPrimerSequence(), init_gpp(), BI_helix::initFromData(), XString::initialize(), InsertDatainGDE(), KeySorter::KeySorter(), Label::Label(), lookfont(), parseCommandLine(), ParseMenus(), readable_probe(), ReadArbdb(), Realigner::realign_seq(), SQ_fetch_filtered_sequence(), translateSAItoColors(), and XString::XString().

template<class TYPE >

void ARB_alloc	(	TYPE *&	tgt,
		size_t	nelem
	)

inline

malloc memory for an array of 'nelem' instances of TYPE and assign its address to 'tgt' (terminates on failure).

1 int *p;

2 ARB_alloc(p, 7); // allocates space for 7 int

See also: ARB_alloc<TYPE>

Definition at line 69 of file arb_mem.h.

template<class TYPE >

TYPE* ARB_calloc ( size_t nelem )

inline

calloc memory for an array of 'nelem' instances of TYPE (terminates on failure).

1 int *p = ARB_calloc<int>(7); // allocates space for 7 int (initializes memory with 0)

See also: ARB_calloc

Definition at line 81 of file arb_mem.h.

References arb_mem::failed_to_allocate().

Referenced by alloc_buffer(), an_add_short(), AP_matrix::AP_matrix(), arb_prm_primer(), arb_prm_read(), aw_install_xkeys(), AWT_distance_meter::AWT_distance_meter(), ED4_SearchResults::buildColorString(), PH_filter::calculate_column_homology(), compress_sequence_tree(), create_loadsave_colored_window(), AW_window::create_mode(), createGbdByKey(), ED4_container::ED4_container(), ED4_create_sequences_for_gde(), ED4_getSaiColorString(), ED4_SearchResults::ED4_SearchResults(), g_b_opti_createGbdByKey(), gb_init_undo_stack(), gbcm_login(), gbcm_read_string(), GBS_create_hash(), GBS_create_numhash(), GBS_optimize_hash(), GEN_make_node_text_init(), GEN_new_position(), ST_ML::get_color_string(), get_sorted_hash_values(), BI_helix::initFromData(), ins_ntree(), InsertDatainGDE(), DI_MATRIX::load(), PHDATA::load(), MG_remaps::MG_remaps(), ParseMenus(), PH_NEIGHBOURJOINING::PH_NEIGHBOURJOINING(), pt_sort_match_list(), ArbImporter::read_line(), read_tree_and_size_internal(), ReadArbdb(), ReadGen(), ReplaceArgs(), resort_data_base(), AP_pos_var::retrieve(), CharPtrArray::set_space(), GBL_IMPL::trace_params(), uniqueID(), and ST_ML::update_ml_likelihood().

template<class TYPE >

void ARB_calloc	(	TYPE *&	tgt,
		size_t	nelem
	)

inline

calloc memory for an array of 'nelem' instances of TYPE and assign its address to 'tgt' (terminates on failure).

1 int *p;

2 ARB_calloc(p, 7); // allocates space for 7 int (initializes memory with 0)

See also: ARB_calloc<TYPE>

Definition at line 94 of file arb_mem.h.

Namespaces

Functions

Function Documentation