#include <DNAml_rates_1_0.h>
Public Attributes | |
| double | likelihood |
| double | log_f [maxpatterns] |
| nodeptr | nodep [MAXNODES] |
| nodeptr | start |
| int | mxtips |
| int | ntips |
| int | nextnode |
| int | opt_level |
| bool | smoothed |
| bool | rooted |
Detailed Description
Definition at line 72 of file DNAml_rates_1_0.h.
Member Data Documentation
| double tree::likelihood |
Definition at line 73 of file DNAml_rates_1_0.h.
Referenced by evaluate(), and setuptree().
| double tree::log_f[maxpatterns] |
Definition at line 74 of file DNAml_rates_1_0.h.
Referenced by evaluate(), and findSiteRates().
Definition at line 75 of file DNAml_rates_1_0.h.
Referenced by addElementLen(), ARB_main(), empiricalfreqs(), findTipName(), freeTree(), getdata(), makevalues(), setupnodex(), setuptree(), treeReadLen(), and uprootTree().
| nodeptr tree::start |
Definition at line 76 of file DNAml_rates_1_0.h.
Referenced by addElementLen(), findSiteRates(), setuptree(), treeLength(), and treeReadLen().
| int tree::mxtips |
Definition at line 77 of file DNAml_rates_1_0.h.
Referenced by addElementLen(), findTipName(), freeTree(), setupnodex(), setuptree(), treeReadLen(), and uprootTree().
| int tree::ntips |
Definition at line 78 of file DNAml_rates_1_0.h.
Referenced by addElementLen(), makeUserRates(), setuptree(), treeReadLen(), and uprootTree().
| int tree::nextnode |
Definition at line 79 of file DNAml_rates_1_0.h.
Referenced by addElementLen(), setuptree(), treeReadLen(), and uprootTree().
| int tree::opt_level |
Definition at line 80 of file DNAml_rates_1_0.h.
Referenced by setuptree(), and treeReadLen().
| bool tree::smoothed |
Definition at line 81 of file DNAml_rates_1_0.h.
Referenced by setuptree(), and treeReadLen().
| bool tree::rooted |
Definition at line 82 of file DNAml_rates_1_0.h.
Referenced by addElementLen(), treeReadLen(), and uprootTree().
The documentation for this struct was generated from the following file:
- TOOLS/DNAml_rates_1_0.h
