- a -
- accept_proposed_names()
: DI_clusters.cxx
- accept_selected_ref_db()
: graph_aligner_gui.cxx
- aci_config_changed_cb()
: saicalc.cxx
- ACI_get_standard_commands()
: adlang1.cxx
, gb_aci.h
- aci_gui_changed_cb()
: saicalc.cxx
- action_cb_wrapper()
: AWTI_edit.cxx
- active_range_changed_cb()
: AW_preset.cxx
- ad_move_tree_info()
: ad_trees.cxx
- ad_tree_set_security()
: ad_trees.cxx
- adaptCopiedAlignment()
: MG_adapt_ali.cxx
- adaption_enabled()
: MG_species.cxx
- add()
: ClustalV.cxx
- add_area_for_gde()
: ED4_main.cxx
- add_boolrule_cb()
: saicalc.cxx
- add_bootstrap()
: arb_read_tree.cxx
- add_border_to_drawsize()
: AWT_canio.cxx
- add_common_property_menu_entries()
: AW_preset.cxx
- add_dtree_to_dtree()
: adoptimize.cxx
- add_field_cb()
: xfergui.cxx
- add_for_data_to()
: aisc_commands.c
- add_ggaps()
: ClustalV.cxx
- add_link_attributes()
: arb_help2xml.cxx
- add_new_input_mask()
: AWT_input_mask.cxx
- add_probe_to_collection_event()
: probe_design.cxx
- add_promotion()
: mkptypes.cxx
- add_rule_cb()
: xfergui.cxx
- add_selected_cb()
: MG_preserves.cxx
- add_selected_experiment_changed_cb()
: EXP_interface.cxx
- add_selected_gene_changed_cb()
: GEN_interface.cxx
- add_selected_SAI_changed_cb()
: SAIs.cxx
- add_selected_species_changed_cb()
: species.cxx
- add_species_to_list_cb()
: ED4_detect_bad_ali.cxx
- add_species_to_merge_list()
: ED4_no_class.cxx
- add_to_callback_chain()
: ad_cb.cxx
- add_to_dtree()
: adoptimize.cxx
- add_update_cb()
: DI_matr.cxx
- add_warning()
: arb_help2xml.cxx
- addCallBacks()
: SaiProbeVisualization.cxx
- AddCallBacks()
: RNA3D_Interface.cxx
- addDefaultTransTable()
: ED4_visualizeSAI.cxx
- addElementLen()
: arb_dnarates.cxx
- addExcludedSymParts()
: mkptypes.cxx
- addid_changed_cb()
: AW_names_admin.cxx
- addids_match_info()
: MG_names.cxx
- addids_match_info_refresh_cb()
: MG_names.cxx
- addinfo()
: ureadseq.c
- addmul()
: trnsprob.cxx
- addOrUpdateTransTable()
: ED4_visualizeSAI.cxx
- addRequiredSymParts()
: mkptypes.cxx
- addseq()
: ureadseq.c
- addSpeciesToConcatenateList()
: NT_concatenate.cxx
- addSymParts()
: mkptypes.cxx
- addToAmbiguous()
: AP_codon_table.cxx
- addword()
: mkptypes.cxx
- adjustOligolenAndMismatches()
: AWTC_next_neighbours.cxx
- adjustTreeRoot()
: NT_syncroot.cxx
- advice_close_cb()
: AW_advice.cxx
- advice_currently_shown()
: AW_advice.cxx
- advice_disabled()
: AW_advice.cxx
- advice_hide_and_close_cb()
: AW_advice.cxx
- advice_id_is_set()
: AW_advice.cxx
- advice_id_offset()
: AW_advice.cxx
- aed_start_naligning()
: ED4_naligner.cxx
- after()
: insdel.cxx
- after_callback_guard()
: AWT_db_browser.cxx
- aisc_accept_calls()
: server.c
, server.h
- aisc_add_destroy_callback()
: server.c
, server.h
- aisc_add_message_queue()
: client.c
- aisc_broadcast()
: server.c
, server.h
- aisc_c_add_to_bytes_queue()
: client.c
- aisc_c_send_bytes_queue()
: client.c
- aisc_calc_blocks()
: aisc_mix.c
- aisc_check_error()
: client.c
- aisc_close()
: client.c
, client.h
- aisc_collect_sets()
: client.c
- aisc_create()
: client.c
, client.h
- aisc_debug_info()
: client.c
, client.h
- aisc_find_lib()
: struct_man.c
, struct_man.h
, names.cxx
- aisc_fork_server()
: server.c
- aisc_free_hash()
: struct_man.c
- aisc_free_key()
: struct_man.c
- aisc_free_link()
: client.c
- aisc_get()
: client.c
, client.h
- aisc_get_keystring()
: aisc_extern.c
, aisc_extern_privat.h
- aisc_get_keystring_dll_header()
: aisc_extern.c
, aisc_extern_privat.h
- aisc_get_object_attribute()
: server.c
- aisc_get_object_names()
: server.c
, server.h
- aisc_hash()
: struct_man.c
- aisc_init_client()
: client.c
- aisc_init_hash()
: struct_man.c
- aisc_insert_hash()
: struct_man.c
- aisc_link()
: struct_man.c
, struct_man.h
, names.cxx
, PT_family.cxx
, PT_match.cxx
, PT_new_design.cxx
- aisc_make_sets()
: server.c
, server.h
- aisc_nput()
: client.c
, client.h
- aisc_open()
: client.c
, client.h
- aisc_put()
: client.c
, client.h
- aisc_read_hash()
: struct_man.c
, struct_man.h
- aisc_remove_destroy_callback()
: server.c
, server.h
- aisc_s_add_to_bytes_queue()
: server.c
- aisc_s_send_bytes_queue()
: server.c
- aisc_server_errorf()
: server.c
, server.h
- aisc_server_load_token()
: server.c
, server.h
- aisc_server_save_token()
: server.c
, server.h
- aisc_server_shutdown()
: server.c
, server.h
- aisc_server_sigsegv()
: server.c
- aisc_talking()
: server.c
- aisc_talking_copy()
: server.c
- aisc_talking_create()
: server.c
- aisc_talking_debug_info()
: server.c
- aisc_talking_delete()
: server.c
- aisc_talking_find()
: server.c
- aisc_talking_func_proto_double()
: aisc_func_types.h
- aisc_talking_func_proto_long()
: aisc_func_types.h
- aisc_talking_func_proto_longp()
: aisc_func_types.h
- aisc_talking_func_proto_void()
: aisc_func_types.h
- aisc_talking_get()
: server.c
- aisc_talking_get_index()
: server.c
, server.h
- aisc_talking_init()
: server.c
- aisc_talking_nset()
: server.c
- aisc_talking_set()
: server.c
- aisc_talking_set_index()
: server.c
- aisc_talking_sets()
: server.c
- aisc_unlink()
: struct_man.c
, struct_man.h
- ali_base_to_number()
: ali_misc.hxx
- ali_checklen_cb()
: AdminGui.cxx
- ALI_create_admin_window()
: AdminGui.cxx
, AliAdmin.h
- ali_error()
: ali_main.cxx
, ali_misc.hxx
- ali_fatal_error()
: ali_main.cxx
, ali_misc.hxx
- ali_format_cb()
: AdminGui.cxx
- ali_is_base()
: ali_misc.hxx
- ali_is_dot()
: ali_misc.hxx
- ali_is_gap()
: ali_misc.hxx
- ali_is_nbase()
: ali_misc.hxx
- ali_is_real_base()
: ali_misc.hxx
- ali_is_real_base_or_gap()
: ali_misc.hxx
- ali_message()
: ali_misc.hxx
- ali_number_to_base()
: ali_misc.hxx
- ali_out_of_memory_if()
: ali_misc.hxx
- ali_print_sequence()
: ali_misc.hxx
- ALI_realign_marked()
: TranslateRealign.cxx
, TranslateRealign.h
- ali_sequence_to_postree_sequence()
: ali_misc.hxx
- ali_sequence_to_string()
: ali_misc.hxx
- ali_string_to_sequence()
: ali_misc.hxx
- ALI_translate_marked()
: TranslateRealign.cxx
, TranslateRealign.h
- ali_warning()
: ali_misc.hxx
- alidata2buffer()
: insdel.cxx
- Align()
: align.cxx
, i-hopper.h
- align_error()
: fast_aligner.cxx
- alignCompactedTo()
: fast_aligner.cxx
- alignment_vars_callback()
: AdminGui.cxx
- alignQuality()
: fast_aligner.cxx
- alignTo()
: fast_aligner.cxx
- alignToGroupConsensus()
: fast_aligner.cxx
- alignToNextRelative()
: fast_aligner.cxx
- AlignTwo()
: align.cxx
- alitype_changed_cb()
: NT_concatenate.cxx
- all_fontsOrSizes_changed_cb()
: AW_preset.cxx
- all_sons_saved()
: PT_buildtree.cxx
- allBranchlengthsAreDefined()
: AP_tree_edge.cxx
, ap_tree_nlen.hxx
- alloc_buffer()
: arbdb.cxx
- alloc_failure_panic()
: arb_mem.cxx
- allocRNS()
: rns.c
- allTrackers()
: AW_inotify.cxx
- ALPHA_DICT_OFFSET()
: adoptimize.cxx
- an_add_short()
: names.cxx
- an_autocaps()
: names.cxx
- an_complete_shrt()
: names.cxx
- an_find_shrt_prefix()
: names.cxx
- an_get_prefix_hash()
: names.cxx
- an_get_short()
: names.cxx
- an_make_prefix()
: names.cxx
- an_remove_short()
: names.cxx
- an_shorts_elems()
: names.cxx
- an_stricmp()
: names.cxx
- an_strlwr()
: names.cxx
- an_strnicmp()
: names.cxx
- announce_recording()
: trackers.cxx
- announce_renamed()
: AWT_TreeAwars.cxx
- ap_calc_bootstrap_remark()
: AP_tree_edge.cxx
- ap_calc_bootstrap_remark_sub()
: AP_tree_edge.cxx
- AP_calc_pos_var_pars()
: AP_pos_var_pars.cxx
- AP_create_con_expert_window()
: AP_consensus.cxx
, NT_local_proto.h
- AP_create_consensus_var()
: AP_consensus.cxx
, NT_local_proto.h
- AP_create_dna_to_ap_bases()
: AP_pro_a_nucs.cxx
, AP_pro_a_nucs.hxx
- AP_create_max_freq_window()
: AP_consensus.cxx
, NT_local_proto.h
- AP_create_pos_var_pars_window()
: AP_pos_var_pars.cxx
, NT_local_proto.h
- AP_dump_index_event()
: arb_probe.cxx
- AP_get_codons()
: AP_codon_table.cxx
, AP_codon_table.hxx
- AP_initialize_codon_tables()
: AP_codon_table.cxx
, AP_codon_table.hxx
- ap_just_tree_rek()
: AP_Tree.cxx
- ap_mark_degenerated()
: AP_Tree.cxx
- ap_mark_duplicates_rek()
: AP_Tree.cxx
- AP_probe_design_event()
: arb_probe.cxx
- AP_probe_iterate_event()
: arb_probe.cxx
- AP_probe_match_event()
: arb_probe.cxx
- AP_timer()
: AP_filter.cxx
, AP_filter.hxx
, AP_sequence.hxx
- ap_tree_node_deleted()
: AP_Tree.cxx
- AP_user_pop_cb()
: PARS_main.cxx
- AP_user_push_cb()
: PARS_main.cxx
- Append()
: prototypes.h
, util.cxx
- append_known_len()
: util.cxx
- appendComment()
: ED4_search.cxx
- appendData()
: Feature.cxx
- AppendNA()
: GDE_FileIO.cxx
, GDE_proto.h
- AppendNA_and_free()
: GDE_arbdb_io.cxx
- appendNameAndUsedBasePositions()
: fast_aligner.cxx
- appendSpaced()
: tools.h
- appendValue()
: UnitTester.cxx
- apply_ACI()
: gb_aci.cxx
- apply_auto_numeric_binop()
: adlang1.cxx
- apply_command_to_alignment()
: insdel.cxx
- apply_double_binop()
: adlang1.cxx
- apply_filters()
: adlang1.cxx
- apply_numeric_binop()
: adlang1.cxx
- apply_ScalerType()
: AW_window.cxx
- apply_to_origin()
: adlang1.cxx
- applyToItemFoundByKey()
: adlang1.cxx
- approve_pos()
: adlang1.cxx
- aps_correct_filename()
: AWT_asciiprint.cxx
- arb2internal_name()
: PT_etc.cxx
- ARB_alloc()
: arb_mem.h
- ARB_alloc_aligned()
: arb_mem.h
- ARB_bind_global_awars()
: AW_global_awars.cxx
, aw_root.hxx
- ARB_calloc()
: arb_mem.h
- arb_count_keys()
: arb_primer.cxx
- ARB_date_string()
: arb_string.cxx
, arb_string.h
- ARB_dateTime_suffix()
: arb_string.cxx
, arb_string.h
- ARB_declare_global_awars()
: AW_global_awars.cxx
, aw_root.hxx
- ARB_delete_columns_using_SAI()
: insdel.cxx
, insdel.h
- ARB_executable()
: arb_misc.cxx
, arb_misc.h
- ARB_files_are_equal()
: arb_diff.h
- ARB_files_differ()
: arb_diff.h
- ARB_float_2_ascii()
: arb_misc.cxx
, arb_misc.h
- ARB_format_alignment()
: insdel.cxx
, insdel.h
- ARB_getenv_ignore_empty()
: arb_misc.cxx
, arb_misc.h
- arb_gethostbyname()
: arb_cs.cxx
- arb_gethostname()
: arb_cs.cxx
, arb_cs.h
- ARB_global_awars_initialized()
: AW_global_awars.cxx
, aw_root.hxx
- ARB_in_expert_mode()
: AW_global_awars.cxx
, aw_root.hxx
- ARB_in_novice_mode()
: aw_root.hxx
- ARB_init_global_awars()
: aw_root.hxx
- ARB_insdel_columns()
: insdel.cxx
, insdel.h
- ARB_insert_columns_using_SAI()
: insdel.cxx
, insdel.h
- ARB_install_handlers()
: arb_handlers.cxx
, arb_handlers.h
- ARB_is_alignment_relative_data()
: insdel.cxx
, insdel.h
- ARB_keep_string()
: arb_string.cxx
, arb_string.h
- arb_look_and_kill_server()
: servercntrl.cxx
, servercntrl.h
- arb_look_and_start_ptserver()
: servercntrl.cxx
, servercntrl.h
- arb_look_and_start_server()
: servercntrl.cxx
, servercntrl.h
- ARB_main()
: mkptypes.cxx
, main.cxx
, prototypes.h
, db_server.cxx
, DI_main.cxx
, ED4_main.cxx
, arb_help2xml.cxx
, ali_main.cxx
, names.cxx
, NT_main.cxx
, PARS_main.cxx
, arb_proto_2_xsub.cxx
, PH_main.cxx
, PT_main.cxx
, pt_prototypes.h
, fb_test.cxx
, Analyser.cxx
, arb_main.cxx
, arb_2_ascii.cxx
, arb_2_bin.cxx
, arb_a2ps.c
, arb_consensus_tree.cxx
, arb_dnarates.cxx
, arb_export_rates.cxx
, arb_flush_mem.cxx
, arb_gene_probe.cxx
, arb_message.cxx
, arb_perf_test.cxx
, arb_primer.cxx
, arb_probe.cxx
, arb_probe_match.cxx
, arb_replace.cxx
, arb_sub2ascii.cxx
, arb_test.cxx
, sim.c
, WETC_main.cxx
- arb_open_socket()
: arb_cs.cxx
, arb_cs.h
- arb_open_tcp_socket()
: arb_cs.cxx
- arb_open_unix_socket()
: arb_cs.cxx
- ARB_path_contains_unwanted_chars()
: arb_misc.cxx
, arb_misc.h
- arb_print_primer()
: arb_primer.cxx
- arb_print_server_params()
: servercntrl.cxx
, servercntrl.h
- arb_prm_menu()
: arb_primer.cxx
- arb_prm_primer()
: arb_primer.cxx
- arb_prm_read()
: arb_primer.cxx
- ARB_realloc()
: arb_mem.h
- ARB_recalloc()
: arb_mem.h
- ARB_redirect_handlers_to()
: arb_handlers.cxx
, arb_handlers.h
- arb_reduce_primer_len()
: arb_primer.cxx
- arb_shell_expand()
: arb_pattern.cxx
, arb_pattern.h
- ARB_sleep()
: arb_sleep.h
- arb_socket_read()
: arb_cs.cxx
, arb_cs.h
- arb_socket_write()
: arb_cs.cxx
, arb_cs.h
- arb_start_server()
: servercntrl.cxx
, servercntrl.h
- ARB_strBeginsWith()
: arb_str.h
- ARB_strchrnul()
: arb_string.h
- ARB_strdup()
: arb_string.h
- ARB_strduplen()
: arb_string.h
- ARB_stricmp()
: arb_str.h
- ARB_stringdup()
: arb_stdstring.h
- ARB_strlower()
: arb_str.h
- ARB_strndup()
: arb_string.h
- ARB_strNULLcmp()
: arb_str.h
- ARB_strpartdup()
: arb_string.h
- ARB_strupper()
: arb_str.h
- ARB_test_mem_equal()
: arb_diff.h
- ARB_textfiles_have_difflines()
: arb_diff.cxx
, arb_diff.h
- arb_trace_argv()
: servercntrl.cxx
, servercntrl.h
- arb_tree_species_deleted_cb()
: ARB_Tree.cxx
- arb_wait_for_server()
: servercntrl.cxx
- ARB_warn_about_unwanted_chars()
: arb_misc.cxx
, arb_misc.h
- ARB_zfclose()
: arb_zfile.cxx
, arb_zfile.h
- ARB_zfopen()
: arb_zfile.cxx
, arb_zfile.h
- Arbdb_get_curelem()
: GDE_arbdb_io.cxx
, GDE_proto.h
- arbtcpdat_changed_cb()
: AWT_sel_boxes.cxx
- are_adjacent_regions()
: SEC_root.hxx
- are_not_in_tree()
: TreeCallbacks.cxx
- areEqual()
: align.cxx
- as_text()
: UnitTester.cxx
- Ascii2NA()
: GDE_FileIO.cxx
, GDE_proto.h
- AsciiTime()
: GDE_Genbank.cxx
- ask_for_conversion_params()
: main.cxx
- askCopyMoveRuleset_cb()
: xfergui.cxx
- auto_calc_changed_cb()
: DI_matr.cxx
- auto_match_cb()
: probe_design.cxx
- auto_match_changed()
: probe_design.cxx
- auto_refresh_cb()
: NT_sync_scroll.cxx
- auto_select_pseudo_species()
: GEN_interface.cxx
- automark_changed_cb()
: NT_branchAnalysis.cxx
- autorefresh_selboxes()
: AW_file.cxx
- autoselect_cb()
: ED4_visualizeSAI.cxx
- availfield_selected_cb()
: xfergui.cxx
- avoid_empty_target_name()
: AWTI_export.cxx
- avoid_overflow()
: aw_rgb.hxx
- AW_activateColorRange()
: AW_preset.cxx
, aw_preset.hxx
- AW_add_inotification()
: AW_inotify.cxx
, aw_inotify.hxx
- AW_advice()
: AW_advice.cxx
, aw_advice.hxx
- aw_ask_sure()
: AW_question.cxx
, aw_question.hxx
- aw_attach_widget()
: AW_button.cxx
, aw_varupdate.hxx
- aw_calc_WM_offsets_delayed()
: AW_window.cxx
- aw_clear_and_hide_message_cb()
: AW_status.cxx
- aw_clear_message_cb()
: AW_status.cxx
, aw_status.hxx
- AW_clock_cursor()
: AW_root.cxx
, aw_window.hxx
- aw_closestatus()
: AW_status.cxx
, aw_status.hxx
- AW_color_groups_active()
: aw_color_groups.hxx
, AW_preset.cxx
- AW_copy_GC_colors()
: AW_preset.cxx
, aw_preset.hxx
- aw_cp_awar_2_widget_cb()
: AW_awar.cxx
- aw_create_color_chooser_window()
: AW_preset.cxx
- aw_create_colorslider_awars()
: AW_preset.cxx
- AW_create_fileselection()
: aw_file.hxx
, AW_file.cxx
- AW_create_fileselection_awars()
: AW_file.cxx
, aw_file.hxx
- aw_create_font_chooser_awars()
: AW_preset.cxx
- aw_create_font_chooser_window()
: AW_preset.cxx
- AW_create_gc_window()
: AW_preset.cxx
, aw_preset.hxx
- AW_create_gc_window_named()
: AW_preset.cxx
, aw_preset.hxx
- AW_create_namesadmin_awars()
: AW_names_admin.cxx
, AW_rename.hxx
- aw_create_shell()
: AW_window.cxx
, aw_window_Xm.hxx
- AW_create_standard_fileselection()
: aw_file.hxx
- AW_DB_selection_refresh_cb()
: AW_select.cxx
- aw_detect_text_size()
: AW_button.cxx
, aw_global.hxx
- AW_displayColorRange()
: AW_preset.cxx
, aw_preset.hxx
- AW_draw_string_on_printer()
: AW_print.cxx
- AW_draw_string_on_screen()
: AW_Xm.cxx
- AW_edit()
: AW_edit.cxx
, aw_edit.hxx
- AW_edit_notified()
: AW_edit.cxx
, aw_edit.hxx
- AW_exposeCB()
: AW_window.cxx
- AW_extract_directory()
: AW_file.cxx
, aw_file.hxx
- AW_focusCB()
: AW_window.cxx
- AW_font_2_xfig()
: AW_xfont.cxx
, aw_xfont.hxx
- AW_forget_all_window_geometry()
: aw_nawar.hxx
, AW_window.cxx
- AW_get_AreaWidget()
: AW_window_Xm_interface.cxx
, aw_window_Xm_interface.hxx
- AW_get_color_group_name()
: aw_color_groups.hxx
, AW_preset.cxx
- AW_get_color_groups_active_awarname()
: aw_color_groups.hxx
, AW_preset.cxx
- AW_get_common_extends_cb()
: AW_device.cxx
- AW_get_drag_gc()
: AW_preset.cxx
, aw_preset.hxx
- aw_get_font_from_xfig()
: aw_xfig.hxx
- AW_get_font_shortname()
: AW_xfont.cxx
, aw_xfont.hxx
- AW_get_font_specification()
: AW_xfont.cxx
, aw_xfont.hxx
- AW_get_nameserver_addid()
: AW_rename.cxx
, AW_rename.hxx
- AW_get_pixmapPath()
: AW_button.cxx
, aw_window.hxx
- AW_get_selected_fullname()
: aw_file.hxx
, AW_file.cxx
- AW_get_XtAppContext()
: AW_window_Xm_interface.cxx
, aw_window_Xm_interface.hxx
- AW_getActiveColorRangeID()
: aw_preset.hxx
, AW_preset.cxx
- AW_getColorRangeNames()
: AW_preset.cxx
, aw_preset.hxx
- AW_getFirstRangeGC()
: AW_preset.cxx
, aw_preset.hxx
- aw_help_back()
: AW_help.cxx
- aw_help_browse()
: AW_help.cxx
- aw_help_edit_help()
: AW_help.cxx
- AW_help_entry_pressed()
: AW_root.cxx
, aw_window.hxx
- aw_help_helpfile_changed_cb()
: AW_help.cxx
- aw_help_history()
: AW_help.cxx
- AW_help_popup()
: AW_help.cxx
, aw_window.hxx
- aw_help_search()
: AW_help.cxx
- aw_help_select_newest_in_history()
: AW_help.cxx
- aw_help_show_external_format()
: AW_help.cxx
- AW_init_color_group_defaults()
: aw_color_groups.hxx
, AW_preset.cxx
- aw_initstatus()
: aw_root.hxx
, AW_status.cxx
- aw_input()
: AW_modal.cxx
, aw_root.hxx
- AW_inputCB_draw_area()
: AW_window.cxx
- AW_insert_common_property_menu_entries()
: AW_preset.cxx
, aw_preset.hxx
, AW_preset.cxx
- aw_insert_default_help_entries()
: aw_window_Xm.hxx
, AW_window.cxx
- aw_insert_message_in_tmp_message()
: AW_status.cxx
- aw_insert_message_in_tmp_message_delayed()
: AW_status.cxx
- aw_install_xkeys()
: AW_xkey.cxx
, aw_xkey.hxx
- AW_is_dir()
: AW_file.cxx
- AW_is_file()
: AW_file.cxx
- AW_IS_IMAGEREF()
: aw_localdef.hxx
- AW_is_link()
: AW_file.cxx
- AW_label_in_awar_list()
: AW_window.cxx
, aw_window_Xm.hxx
- aw_loop_forget_window_geometry()
: AW_window.cxx
- aw_loop_get_window_geometry()
: AW_window.cxx
- AW_manage_GC()
: AW_preset.cxx
, aw_preset.hxx
- AW_map_AreaGC()
: aw_window_Xm_interface.hxx
, AW_window_Xm_interface.cxx
- aw_message()
: aw_msg.hxx
, AW_status.cxx
- aw_message_and_dump_stderr()
: AW_root.cxx
- aw_message_if()
: aw_msg.hxx
- aw_message_reload()
: AW_preset.cxx
- aw_message_save_cb()
: AW_status.cxx
- aw_message_timer_listen_event()
: AW_modal.cxx
, aw_window_Xm.hxx
- aw_modal_file_selection()
: AW_modal.cxx
, aw_root.hxx
- aw_mode_callback()
: AW_window.cxx
- AW_motionCB()
: AW_window.cxx
- AW_normal_cursor()
: AW_root.cxx
, aw_window.hxx
- aw_onExpose_calc_WM_offsets()
: AW_window.cxx
- aw_openstatus()
: AW_status.cxx
, aw_status.hxx
- AW_openURL()
: AW_help.cxx
, aw_window.hxx
- AW_POPDOWN()
: AW_window.cxx
, aw_window.hxx
- aw_popup_exit()
: aw_question.hxx
, AW_question.cxx
- AW_popup_gc_color_groups_window()
: AW_preset.cxx
- AW_popup_gc_color_range_window()
: AW_preset.cxx
, aw_preset.hxx
- AW_popup_namesadmin_window()
: AW_names_admin.cxx
, AW_rename.hxx
- aw_popup_ok()
: AW_question.cxx
, aw_question.hxx
- AW_preset_create_color_button()
: AW_preset.cxx
- AW_preset_create_font_chooser()
: AW_preset.cxx
- AW_preset_window()
: AW_preset.cxx
, aw_preset.hxx
- aw_question()
: AW_question.cxx
, aw_question.hxx
- AW_reactivate_all_advices()
: AW_advice.cxx
, aw_advice.hxx
- AW_reactivate_all_questions()
: AW_question.cxx
, aw_question.hxx
- aw_realize_widget()
: AW_window.cxx
, aw_window_Xm.hxx
- aw_ref_to_title()
: AW_help.cxx
- AW_refresh_fileselection()
: AW_file.cxx
, aw_file.hxx
- aw_refresh_tmp_message_display()
: AW_status.cxx
- AW_remove_inotification()
: AW_inotify.cxx
, aw_inotify.hxx
- AW_resizeCB_draw_area()
: AW_window.cxx
- aw_root_init_font()
: aw_window_Xm.hxx
, AW_xfont.cxx
- AW_save_properties()
: AW_preset.cxx
, aw_preset.hxx
- AW_save_specific_properties()
: AW_preset.cxx
, aw_preset.hxx
- AW_select_nameserver()
: AW_rename.hxx
, AW_rename.cxx
- AW_server_callback()
: AW_window.cxx
, aw_window_Xm.hxx
- aw_set_color()
: AW_preset.cxx
- aw_set_delete_window_cb()
: AW_window.cxx
- aw_set_local_message()
: aw_root.hxx
, AW_status.cxx
- aw_set_rgb_sliders()
: AW_preset.cxx
- AW_set_selected_fullname()
: AW_file.cxx
, aw_file.hxx
- aw_set_sliders_from_color()
: AW_preset.cxx
- aw_size_awar_name()
: AW_window.cxx
- aw_status()
: arb_export_sequences.cxx
- aw_status_aborted()
: AW_status.cxx
, aw_status.hxx
- aw_status_check_pipe()
: AW_status.cxx
- aw_status_gauge()
: AW_status.cxx
, aw_status.hxx
- aw_status_hide()
: AW_status.cxx
- aw_status_kill()
: AW_status.cxx
- aw_status_read_byte()
: AW_status.cxx
- aw_status_read_command()
: AW_status.cxx
- aw_status_read_int()
: AW_status.cxx
- aw_status_subtitle()
: aw_status.hxx
, AW_status.cxx
- aw_status_timer_event()
: AW_status.cxx
- aw_status_timer_hide_event()
: AW_status.cxx
- aw_status_timer_listen_event()
: AW_status.cxx
- aw_status_title()
: AW_status.cxx
, aw_status.hxx
- aw_status_wait_for_open()
: AW_status.cxx
- aw_status_write()
: AW_status.cxx
- AW_test_nameserver()
: AW_rename.cxx
, AW_rename.hxx
- AW_timer_callback()
: AW_root.cxx
- AW_timer_callback_never_disabled()
: AW_root.cxx
- AW_unfold_path()
: AW_file.cxx
, aw_file.hxx
- aw_uninstall_xkeys()
: AW_xkey.cxx
, aw_xkey.hxx
- aw_update_all_window_geometry_awars()
: AW_window.cxx
, aw_nawar.hxx
- aw_update_window_geometry_awars()
: AW_window.cxx
- AW_value_changed_callback()
: AW_button.cxx
- AW_var_gbdata_callback()
: AW_awar.cxx
- AW_var_gbdata_callback_delete()
: AW_awar.cxx
- AW_var_gbdata_callback_delete_intern()
: AW_awar.cxx
- AW_variable_update_callback()
: AW_button.cxx
, aw_varupdate.hxx
- aw_window_avoid_destroy_cb()
: AW_window.cxx
- aw_window_destroy_cb()
: AW_window.cxx
- aw_window_noexit_destroy_cb()
: AW_window.cxx
- aw_xfig_hash_free_loop()
: AW_xfig.cxx
- AW_xfigCB_info_area()
: AW_window.cxx
- aw_xkey_2_awkey()
: AW_xkey.cxx
, aw_xkey.hxx
- AWAR_AW_FOCUS_FOLLOWS_MOUSE_changed_cb()
: AW_global_awars.cxx
- AWAR_AWM_MASK_changed_cb()
: AW_global_awars.cxx
- awar_changed_cb()
: AWT_input_mask.cxx
- AWAR_DB_PATH_changed_cb()
: NT_main.cxx
- awar_matrix_cell()
: saicalc.cxx
- awar_name_tmp()
: merge.hxx
- awar_selected_FTS()
: xfergui.cxx
- awar_set_temp_if_is_default()
: AW_root.cxx
- awar_translate()
: saicalc.cxx
- awar_updated_cb()
: AW_global_awars.cxx
- awarname()
: ED4_flags.cxx
, NT_sync_scroll.cxx
, db_scanner.cxx
- awarvalue2query_operator()
: db_query.cxx
- aws_init_localized()
: ED4_search.cxx
- AWT_activate_prompt()
: AWT_prompt.cxx
, awt_prompt.hxx
- awt_add_sequences_to_list()
: AWT_filter.cxx
- AWT_announce_tree_deleted()
: awt_TreeAwars.hxx
, AWT_TreeAwars.cxx
- AWT_announce_tree_renamed()
: awt_TreeAwars.hxx
, AWT_TreeAwars.cxx
- awt_aps_calc_pages_needed()
: AWT_asciiprint.cxx
- awt_aps_get_default_lines_per_page()
: AWT_asciiprint.cxx
- awt_aps_get_xy_ratio()
: AWT_asciiprint.cxx
- awt_aps_go()
: AWT_asciiprint.cxx
- awt_aps_set_magnification_to_fit_xpage()
: AWT_asciiprint.cxx
- awt_aps_set_magnification_to_fit_ypage()
: AWT_asciiprint.cxx
- awt_aps_text_changed()
: AWT_asciiprint.cxx
- awt_auto_popdown_cb()
: AWT_sel_boxes.cxx
, awt_sel_boxes.hxx
- AWT_change_input_mask()
: AWT_input_mask.cxx
- awt_clear_selection_list_cb()
: AWT_sel_boxes.cxx
, awt_sel_boxes.hxx
- AWT_console()
: awt_misc.hxx
, AWT_misc.cxx
- awt_create_2_filter_window()
: AWT_filter.cxx
- awt_create_ALI_selection_button()
: awt_sel_boxes.hxx
, AWT_sel_boxes.cxx
- awt_create_ALI_selection_list()
: AWT_sel_boxes.cxx
, awt_sel_boxes.hxx
- AWT_create_ascii_print_window()
: AWT_asciiprint.cxx
, awt.hxx
- awt_create_aww_vars()
: AWT_www.cxx
, awt_www.hxx
- awt_create_collect_buttons()
: awt_modules.hxx
- awt_create_CONFIG_selection_list()
: AWT_sel_boxes.cxx
, awt_sel_boxes.hxx
- awt_create_filter_awars()
: awt_filter.hxx
, AWT_filter.cxx
- awt_create_input_mask()
: AWT_input_mask.cxx
- AWT_create_IUPAC_info_window()
: awt_misc.hxx
, AWT_misc.cxx
- awt_create_load_box()
: AWT_sel_boxes.cxx
, awt_sel_boxes.hxx
- AWT_create_mask_submenu()
: awt_input_mask.hxx
, AWT_input_mask.cxx
- awt_create_order_buttons()
: awt_modules.hxx
- awt_create_PTSERVER_selection_button()
: awt_sel_boxes.hxx
, AWT_sel_boxes.cxx
- awt_create_PTSERVER_selection_list()
: AWT_sel_boxes.cxx
, awt_sel_boxes.hxx
- AWT_create_root()
: awt.hxx
, AWT_db_browser.cxx
- awt_create_SAI_selection_button()
: AWT_sel_boxes.cxx
, awt_sel_boxes.hxx
- awt_create_SAI_selection_list()
: AWT_sel_boxes.cxx
, awt_sel_boxes.hxx
- awt_create_select_cancel_window()
: DI_matr.cxx
- awt_create_select_filter()
: awt_filter.hxx
, AWT_filter.cxx
- awt_create_select_filter_win()
: awt_filter.hxx
, AWT_filter.cxx
- awt_create_select_filter_window_aw_cb()
: AWT_filter.cxx
- awt_create_select_filter_window_gb_cb()
: AWT_filter.cxx
- awt_create_selection_list_with_input_field()
: AWT_sel_boxes.cxx
, awt_sel_boxes.hxx
- awt_create_subset_selection_list()
: AWT_sel_boxes.cxx
, awt_sel_boxes.hxx
- awt_create_TREE_selection_list()
: AWT_sel_boxes.cxx
, awt_sel_boxes.hxx
- AWT_create_www_window()
: AWT_www.cxx
, awt_www.hxx
- AWT_default_protein_type()
: AP_pro_a_nucs.cxx
, AP_pro_a_nucs.hxx
- awt_destroy_filter()
: AWT_filter.cxx
, awt_filter.hxx
- AWT_destroy_input_masks()
: awt_input_mask.hxx
, AWT_input_mask.cxx
- awt_edit_arbtcpdat_cb()
: AWT_sel_boxes.cxx
, awt_sel_boxes.hxx
- AWT_edit_input_mask()
: AWT_input_mask.cxx
- AWT_expose_cb()
: awt_canvas.hxx
, AWT_canvas.cxx
- AWT_GC_changed_cb()
: AWT_canvas.cxx
, awt_canvas.hxx
- AWT_get_codon_code_name()
: AP_codon_table.hxx
, AP_codon_table.cxx
- AWT_get_combined_filter_name()
: AWT_filter.cxx
, awt_filter.hxx
- awt_get_filter()
: AWT_filter.cxx
, awt_filter.hxx
- AWT_get_translator()
: AP_pro_a_nucs.hxx
, AP_pro_a_nucs.cxx
- AWT_get_user_translator()
: AP_pro_a_nucs.hxx
, AP_pro_a_nucs.cxx
- AWT_getItemType()
: AWT_input_mask.cxx
, awt_input_mask.hxx
- AWT_graphic_parsimony_root_changed()
: PARS_dtree.cxx
- AWT_graphic_tree_node_deleted()
: TreeDisplay.cxx
- AWT_graphic_tree_root_changed()
: TreeDisplay.cxx
- AWT_initialize_input_mask()
: AWT_input_mask.cxx
, awt.hxx
- AWT_initTreeAwarRegistry()
: awt_TreeAwars.hxx
, AWT_TreeAwars.cxx
- awt_input_mask_awar_changed_cb()
: AWT_input_mask.cxx
- AWT_input_mask_browse_url()
: AWT_input_mask.cxx
- AWT_input_mask_perform_action()
: AWT_input_mask.cxx
- AWT_insert_config_manager()
: AWT_config_manager.cxx
, awt_config_manager.hxx
, AWT_config_manager.cxx
- AWT_insert_DBcompression_selector()
: AWT_misc.cxx
, awt_misc.hxx
- AWT_insert_DBsaveType_selector()
: awt_misc.hxx
, AWT_misc.cxx
- AWT_install_cb_guards()
: awt.hxx
, AWT_db_browser.cxx
- AWT_install_postcb_cb()
: awt.hxx
, AWT_db_browser.cxx
- awt_invalid_filter()
: awt_filter.hxx
, AWT_filter.cxx
- AWT_is_codon()
: AP_codon_table.hxx
, AP_codon_table.cxx
- AWT_look_input_mask()
: awt.hxx
, AWT_input_mask.cxx
- AWT_modify_managed_configs()
: AWT_config_manager.cxx
, awt_config_manager.hxx
- awt_open_ACI_URL_with_item()
: awt_www.hxx
, AWT_www.cxx
- awt_open_input_mask()
: AWT_input_mask.cxx
- AWT_open_input_mask()
: AWT_input_mask.cxx
- awt_openDefaultURL_on_selected_species()
: AWT_www.cxx
- awt_openDefaultURL_with_item()
: awt_www.hxx
, AWT_www.cxx
- AWT_openURL()
: AWT_www.cxx
, awt_www.hxx
- AWT_popup_print_window()
: AWT_canio.cxx
, awt_canvas.hxx
- awt_popup_SAI_selection_list()
: AWT_sel_boxes.cxx
, awt_sel_boxes.hxx
- AWT_popup_sec_export_window()
: AWT_canio.cxx
, awt_canvas.hxx
- AWT_popup_tree_export_window()
: awt_canvas.hxx
, AWT_canio.cxx
- awt_pre_to_view()
: nds.cxx
- awt_print_tree_check_size()
: AWT_canio.cxx
- awt_reconfigure_ALI_selection_list()
: awt_sel_boxes.hxx
, AWT_sel_boxes.cxx
- AWT_registerTreeAwarCallback()
: AWT_TreeAwars.cxx
, awt_TreeAwars.hxx
- AWT_registerTreeAwarSimple()
: awt_TreeAwars.hxx
, AWT_TreeAwars.cxx
- AWT_reload_input_mask()
: AWT_input_mask.cxx
- awt_rename_cb()
: AW_rename.cxx
- AWT_resize_cb()
: awt_canvas.hxx
- awt_select_pre_from_view()
: nds.cxx
- awt_set_awar_to_valid_filter_good_for_tree_methods()
: awt_filter.hxx
, AWT_filter.cxx
- awt_set_subset_selection_content()
: awt_sel_boxes.hxx
, AWT_sel_boxes.cxx
- AWT_show_file()
: AWT_asciiprint.cxx
, awt.hxx
- awt_std_SAI_filter_cb()
: AWT_sel_boxes.cxx
, awt_sel_boxes.hxx
- AWT_system_cb()
: awt_misc.hxx
, AWT_misc.cxx
, awt_misc.hxx
- AWT_system_in_console_cb()
: awt_misc.hxx
, AWT_misc.cxx
- AWT_trigger_remote_action()
: AWT_db_browser.cxx
, awt.hxx
- awt_www_select_change()
: AWT_www.cxx
- AWTC_create_common_next_neighbour_fields()
: awtc_next_neighbours.hxx
, AWTC_next_neighbours.cxx
- AWTC_create_common_next_neighbour_vars()
: AWTC_next_neighbours.cxx
, awtc_next_neighbours.hxx
- AWTC_create_numbered_suffix()
: AW_rename.hxx
, AW_rename.cxx
- AWTC_create_rename_awars()
: AW_rename.hxx
- AWTC_create_rename_window()
: AW_rename.hxx
, AW_rename.cxx
- AWTC_create_submission_variables()
: AWTC_submission.cxx
, awtc_submission.hxx
- AWTC_create_submission_window()
: awtc_submission.hxx
, AWTC_submission.cxx
- awtc_delete_names_file()
: AW_names_admin.cxx
- awtc_edit_names_file()
: AW_names_admin.cxx
- AWTC_generate_one_name()
: AW_rename.hxx
, AW_rename.cxx
- AWTC_generate_random_name()
: AW_rename.cxx
, AW_rename.hxx
- AWTC_makeUniqueShortName()
: AW_rename.cxx
, AW_rename.hxx
- awtc_mark_hits()
: ui_species.cxx
- awtc_move_hits()
: ui_species.cxx
- AWTC_name_quality()
: AW_rename.hxx
, AW_rename.cxx
- awtc_nn_search()
: ui_species.cxx
- awtc_nn_search_all_listed()
: ui_species.cxx
- AWTC_pars_names()
: AW_rename.hxx
, AW_rename.cxx
- AWTC_recreate_name()
: AW_rename.hxx
, AW_rename.cxx
- awtc_remove_arb_acc()
: AW_names_admin.cxx
- AWTI_acquire_imported_DB_and_cleanup_importer()
: awti_import.hxx
, AWTI_import.cxx
- AWTI_activate_export_test_window()
: awti_edit.hxx
, AWTI_edit.cxx
- AWTI_activate_import_test_window()
: AWTI_edit.cxx
, awti_edit.hxx
- AWTI_cleanup_importer()
: awti_import.hxx
, AWTI_import.cxx
- AWTI_import_set_ali_and_type()
: AWTI_import.cxx
, awti_import.hxx
- AWTI_open_import_window()
: awti_import.hxx
, AWTI_import.cxx
- AWTI_set_importDB_pointer()
: awti_import.hxx
, AWTI_import.cxx