- m -
- MacInit()
: macinit.c
- macke_abbrev()
: macke.cxx
- macke_continue_line()
: macke.cxx
- macke_is_genbank_entry_comment()
: macke.cxx
- macke_key_word()
: macke.cxx
, prototypes.h
- macke_one_entry_in()
: macke.cxx
- macke_origin()
: macke.cxx
, prototypes.h
- macke_out_header()
: macke.cxx
, prototypes.h
- macke_print_keyword_rem()
: macke.cxx
- macke_print_line()
: macke.cxx
- macke_print_prefixed_line()
: macke.cxx
- macke_print_prefixed_line_if_content()
: macke.cxx
- macke_read_seq()
: macke.cxx
- macke_seq_data_out()
: macke.cxx
, prototypes.h
- macke_seq_display_out()
: macke.cxx
, prototypes.h
- macke_seq_info_out()
: macke.cxx
, prototypes.h
- macke_to_gcg()
: gcg.cxx
- macro_execution_finished()
: macro_gui.cxx
- macro_recording_changed_cb()
: macro_gui.cxx
- macro_terminated()
: trackers.cxx
- main()
: ps_detect_weak_differences.cxx
, ps_eval_candidates.cxx
, ps_find_probes.cxx
, ps_get_probes.cxx
, ps_make_sample_db.cxx
, ps_merge_my_dbs.cxx
, ps_my2ascii.cxx
, ps_my2asciipaths.cxx
, ps_show_result.cxx
, macinit.c
, readseq.c
, arb_main.cxx
, c0x.cxx
, nostd.cxx
, arb_calc_pvp.cxx
, arb_export_newick.cxx
, arb_export_seq_filtered.cxx
, arb_export_sequences.cxx
, arb_export_tree.cxx
, arb_read_tree.cxx
, arb_write_tree_comment.cxx
, TestEnvironment.cxx
, aisc.c
, i-hopper.cxx
, perlmain_source.c
, ps_arb2asciipaths.cxx
, ps_convert_db.cxx
- make_alnum()
: names.cxx
- make_alpha()
: names.cxx
- make_async_call()
: servercntrl.cxx
- make_counter()
: arb_progress.cxx
- make_limit_string()
: field_shader.cxx
- make_macro_recording_tracker()
: trackers.cxx
- make_pamo()
: ClustalV.cxx
- make_PT_family_list()
: PT_family.cxx
- makeAliData()
: insdel.cxx
- makeAliSeqData()
: insdel.cxx
- makeEdge()
: ap_main.hxx
- makeFromConfigRule()
: saiop.cxx
- makeHelpCallback()
: aw_window.hxx
- makeItemFieldShader()
: field_shader.cxx
, field_shader.h
- MAKEREL()
: admap.cxx
- makeSymPart()
: mkptypes.cxx
- makeTitle()
: ColumnStat_2_gnuplot.cxx
- makeUniqueShortName()
: AW_rename.cxx
- makeUserRates()
: arb_dnarates.cxx
- makevalues()
: arb_dnarates.cxx
- makeweights()
: arb_dnarates.cxx
- map_awXKey()
: AW_xkey.cxx
- map_extended()
: MG_extendeds.cxx
- map_item_cb()
: info_window.cxx
- map_SAI_to_scanner()
: ad_ext.cxx
- map_viewkey()
: nds.cxx
- map_viewkeys()
: nds.cxx
- MapDisplayParameters()
: RNA3D_OpenGLEngine.cxx
, RNA3D_OpenGLEngine.hxx
- mapping_awar_name()
: AWT_map_key.cxx
- MapSaiToEcoliTemplateChanged_CB()
: RNA3D_OpenGLEngine.cxx
, RNA3D_OpenGLEngine.hxx
- MapSearchStringsToEcoliTemplateChanged_CB()
: RNA3D_OpenGLEngine.cxx
, RNA3D_OpenGLEngine.hxx
- MapSelectedSpeciesChanged_CB()
: RNA3D_OpenGLEngine.cxx
, RNA3D_OpenGLEngine.hxx
- mapTree()
: NT_taxonomy.cxx
- mark_action()
: NT_taxonomy.cxx
- mark_as_macro_executor()
: adtools.cxx
- mark_cluster()
: DI_clusters.cxx
- mark_clusters()
: DI_clusters.cxx
- mark_colored_cb()
: db_query.cxx
- mark_deep_leafs_automark_cb()
: NT_branchAnalysis.cxx
- mark_deep_leafs_cb()
: NT_branchAnalysis.cxx
- mark_degenerated_branches_automark_cb()
: NT_branchAnalysis.cxx
- mark_degenerated_branches_cb()
: NT_branchAnalysis.cxx
- mark_gene_species()
: GEN_map.cxx
- mark_gene_species_of_marked_genes()
: GEN_map.cxx
- mark_gene_species_using_current_alignment()
: GEN_map.cxx
- mark_genes_of_marked_gene_species()
: GEN_map.cxx
- mark_long_branches_automark_cb()
: NT_branchAnalysis.cxx
- mark_long_branches_cb()
: NT_branchAnalysis.cxx
- MARK_NONFINAL_CLASS()
: reader.h
, arb_strarray.h
, BufferedFileReader.h
, ed4_class.hxx
, AP_Tree.hxx
, ARB_Tree.hxx
, TreeDisplay.hxx
, aw_window.hxx
- MARK_NONFINAL_DTOR()
: reader.h
- MARK_NONFINAL_FUNCTION()
: BufferedFileReader.h
, ed4_class.hxx
, AP_Tree.hxx
, ARB_Tree.hxx
, TreeDisplay.hxx
- MARK_NONFINAL_METHOD()
: TreeNode.h
, ed4_class.hxx
, AP_Tree.hxx
, aw_device.hxx
- mark_nontree_cb()
: TreeCallbacks.cxx
- mark_organisms()
: GEN_map.cxx
- mark_organisms_with_marked_genes()
: GEN_map.cxx
- mark_pipe_broken()
: AW_status.cxx
- mark_queried_cb()
: db_query.cxx
- mark_referred_species()
: NT_extern.cxx
- mark_species()
: NT_edconf.cxx
- mark_tree_cb()
: TreeCallbacks.cxx
- markerThresholdChanged_cb()
: TreeDisplay.cxx
- master_gap_extend()
: ClustalV.cxx
- master_gap_open()
: ClustalV.cxx
- master_gapAt()
: ClustalV.cxx
- master_gapAtWithOpenPenalty()
: ClustalV.cxx
- match_changed_cb()
: probe_design.cxx
- match_string()
: PT_match.cxx
, pt_prototypes.h
- matchesSymPart()
: mkptypes.cxx
- matchesUsingWildcard()
: ED4_block.cxx
- matchingParen()
: mkptypes.cxx
- matrix_changed_cb()
: DI_matr.cxx
- matrix_config_changed_cb()
: saicalc.cxx
- matrix_gui_changed_cb()
: saicalc.cxx
- matrix_halfsize()
: AP_matrix.hxx
- matrix_needs_recalc_cb()
: DI_matr.cxx
- max()
: aisc.c
, global.h
, seq_search.hxx
, aw_rgb.hxx
- max_kb_for_passes()
: PT_partition.h
- max_probes_for_passes()
: PT_partition.h
- maxAllowedInsertions()
: PARS_main.cxx
- maxCompressionSteps()
: adseqcompr.cxx
- MAXLENtooSmall()
: ClustalV.cxx
- member_of_DB()
: AW_awar.cxx
- memcpy3()
: Translate.cxx
- memstr()
: adoptimize.cxx
- MERGE_create_all_awars()
: MG_main.cxx
, mg_merge.hxx
- MERGE_create_db_file_awars()
: MG_main.cxx
, mg_merge.hxx
- MERGE_create_main_window()
: MG_main.cxx
, mg_merge.hxx
- merge_from_cb()
: NT_extern.cxx
- merge_from_to()
: NT_extern.cxx
- merge_into_cb()
: NT_extern.cxx
- MERGE_sequences_simple()
: mg_merge.hxx
, MG_species.cxx
- merge_startup_abort_cb()
: NT_main.cxx
- merge_startup_error_window()
: NT_main.cxx
- mergeKnownFields()
: xfergui.cxx
- mergeSimilarSpecies()
: NT_concatenate.cxx
- mergeToKnownFields()
: xfergui.cxx
- message()
: ali_main.cxx
- message_cb()
: AW_modal.cxx
, aw_window_Xm.hxx
- MG_aci_changed_cb()
: MG_gene_species.cxx
- MG_adaptAllCopiedAlignments()
: MG_adapt_ali.cxx
, MG_adapt_ali.hxx
- mg_check_field_cb()
: MG_checkfield.cxx
- MG_config_delete_cb()
: MG_configs.cxx
- MG_copy_and_check_alignments()
: merge.hxx
, MG_alignment.cxx
- mg_count_queried()
: merge.hxx
, MG_checkfield.cxx
- MG_create_config_awar()
: merge.hxx
, MG_configs.cxx
- MG_create_current_field_content()
: MG_gene_species.cxx
- MG_create_db_dependent_awars()
: MG_main.cxx
- MG_create_db_dependent_rename_awars()
: merge.hxx
, MG_names.cxx
- MG_create_extendeds_awars()
: merge.hxx
, MG_extendeds.cxx
- MG_create_field_content()
: MG_gene_species.cxx
- MG_create_gene_species_awars()
: MG_gene_species.cxx
, merge.hxx
- MG_create_merge_alignment_window()
: merge.hxx
, MG_alignment.cxx
- MG_create_merge_configs_window()
: MG_configs.cxx
, merge.hxx
- MG_create_merge_names_window()
: merge.hxx
, MG_names.cxx
- MG_create_merge_SAIs_window()
: MG_extendeds.cxx
, merge.hxx
- MG_create_merge_species_window()
: merge.hxx
, MG_species.cxx
- MG_create_merge_trees_window()
: merge.hxx
, MG_trees.cxx
- MG_create_preserves_selection_window()
: merge.hxx
, MG_preserves.cxx
- MG_create_remap()
: MG_adapt_ali.cxx
- MG_create_rename_awars()
: merge.hxx
, MG_names.cxx
- MG_create_save_as_window()
: MG_main.cxx
- MG_create_species_awars()
: MG_species.cxx
, merge.hxx
- MG_create_trees_awar()
: merge.hxx
, MG_trees.cxx
- MG_current_field_def_changed_cb()
: MG_gene_species.cxx
- MG_delete_selected_field_def()
: MG_gene_species.cxx
- MG_dest_field_changed_cb()
: MG_gene_species.cxx
- MG_diff_strings()
: MG_checkfield.cxx
- MG_equal_alignments()
: MG_species.cxx
- MG_exit()
: MG_main.cxx
- MG_expect_renamed()
: merge.hxx
, MG_names.cxx
- MG_export_fields()
: MG_gene_species.cxx
, merge.hxx
- MG_extended_delete_cb()
: MG_extendeds.cxx
- MG_gene_species_create_field_transfer_def_window()
: merge.hxx
, MG_gene_species.cxx
- mg_get_first_sai_data1()
: MG_extendeds.cxx
- mg_get_first_sai_data2()
: MG_extendeds.cxx
- mg_get_first_species_data1()
: MG_species.cxx
- mg_get_first_species_data2()
: MG_species.cxx
- mg_get_selected_sai1()
: MG_extendeds.cxx
- mg_get_selected_sai2()
: MG_extendeds.cxx
- mg_get_selected_species1()
: MG_species.cxx
- mg_get_selected_species2()
: MG_species.cxx
- mg_initialize_SAI_selectors()
: MG_extendeds.cxx
- mg_initialize_species_selectors()
: MG_species.cxx
- MG_left_AWAR_SPECIES_NAME()
: merge.hxx
, MG_species.cxx
- MG_map_species()
: MG_species.cxx
- MG_merge_tagged_field_cb()
: MG_species.cxx
- MG_method_changed_cb()
: MG_gene_species.cxx
- MG_save_cb()
: MG_main.cxx
- MG_save_quick_result_cb()
: MG_main.cxx
- mg_select_sai1()
: MG_extendeds.cxx
- mg_select_sai2()
: MG_extendeds.cxx
- mg_select_species1()
: MG_species.cxx
- mg_select_species2()
: MG_species.cxx
- MG_set_renamed()
: merge.hxx
, MG_names.cxx
- MG_source_field_changed_cb()
: MG_gene_species.cxx
- MG_transfer_config()
: MG_configs.cxx
- MG_transfer_extended()
: MG_extendeds.cxx
- MG_transfer_fields_info()
: MG_species.cxx
- mg_transfer_listed_species()
: MG_species.cxx
- MG_transfer_one_species()
: MG_species.cxx
- mg_transfer_selected_species()
: MG_species.cxx
- MG_transfer_species()
: MG_species.cxx
- MG_transfer_tree()
: MG_trees.cxx
- MG_update_example()
: MG_gene_species.cxx
- MG_update_selection_list_on_field_transfers()
: MG_gene_species.cxx
- mg_xfer_via_fts()
: MG_species.cxx
- mid()
: adlang1.cxx
- min()
: arb_dnarates.cxx
, global.h
, fast_aligner.cxx
, adoptimize.cxx
- minfit_()
: eispack.cxx
- minmax_awar_pair_changed_cb()
: probe_design.cxx
- MissingArgumentFor()
: mkptypes.cxx
- mix()
: item_shader.h
- mix_floats()
: ValueTuple.cxx
- mixtree_and_calclengths()
: PARS_main.cxx
- mm2inch()
: AWT_canio.cxx
- mod_boolrule_cb()
: saicalc.cxx
- mode_is_user_writeable()
: arb_file.cxx
- modes_cb()
: ED4_root.cxx
- modifies_awar()
: recmac.cxx
- modify_configurations()
: NT_edconf.cxx
- modify_fields_of_queried_cb()
: db_query.cxx
- modify_probe_event()
: probe_design.cxx
- modify_target_string()
: probe_design.cxx
- modsai_cb()
: ED4_block.cxx
- motion_cb()
: DI_view_matrix.cxx
- motion_event()
: AWT_canvas.cxx
- MouseButton()
: macinit.c
- MouseMoveEventHandler()
: RNA3D_Interface.cxx
- move_and_update_rectangle()
: ED4_window.cxx
- move_dll_header()
: aisc_extern.c
, aisc_extern_privat.h
- move_field_cb()
: xfergui.cxx
- move_son()
: CT_ntree.cxx
- move_species_to_extended()
: ui_species.cxx
- MP_aborted()
: MP_noclass.cxx
, MP_externs.hxx
- MP_all_species_string()
: pt_prototypes.h
, PT_match.cxx
- MP_cache_sonden()
: MP_noclass.cxx
, mp_proto.hxx
- MP_cache_sonden2()
: MP_noclass.cxx
, mp_proto.hxx
- MP_close_main()
: MP_noclass.cxx
, MP_externs.hxx
- MP_collect_probes()
: MP_Window.cxx
- MP_Comment()
: MP_noclass.cxx
, mp_proto.hxx
- MP_compute()
: MP_noclass.cxx
, MultiProbe.hxx
- MP_count_all_species()
: PT_match.cxx
, pt_prototypes.h
- MP_delete_selected()
: MP_externs.hxx
, MP_noclass.cxx
- mp_file2list()
: MP_Window.cxx
- MP_gen_quality()
: mp_proto.hxx
, MP_noclass.cxx
- MP_gen_singleprobe()
: mp_proto.hxx
, MP_noclass.cxx
- MP_get_comment()
: MP_noclass.cxx
, MP_externs.hxx
- MP_get_probes()
: MP_noclass.cxx
- MP_group_all_except_marked()
: MP_noclass.cxx
, MP_externs.hxx
- MP_init_local_com_struct()
: MP_noclass.cxx
, MP_externs.hxx
- MP_is_probe()
: MP_noclass.cxx
- mp_list2file()
: MP_Window.cxx
- MP_mark_probes_in_tree()
: MP_noclass.cxx
, mp_proto.hxx
- MP_match_string()
: PT_match.cxx
, pt_prototypes.h
- MP_modify_selected()
: MP_noclass.cxx
, mp_proto.hxx
- MP_new_sequence()
: MP_noclass.cxx
, mp_proto.hxx
- MP_normal_colors_in_tree()
: MP_noclass.cxx
, MP_externs.hxx
- MP_popup_result_window()
: MP_externs.hxx
, MP_noclass.cxx
- MP_result_combination_chosen()
: MP_noclass.cxx
, MP_externs.hxx
- MP_selected_chosen()
: MP_noclass.cxx
, MP_externs.hxx
- MP_show_probes_in_tree()
: MP_externs.hxx
, MP_noclass.cxx
- MP_show_probes_in_tree_move()
: MP_noclass.cxx
, MP_externs.hxx
- mtoe()
: embl.cxx
, prototypes.h
- mtog()
: prototypes.h
, mg.cxx
- mtog_decode_ref_and_remarks()
: mg.cxx
- mtog_genbank_def_and_source()
: mg.cxx
- multi_species_man_consensus_id_starts_with()
: ED4_cursor.cxx
- multifurcation_cb()
: ad_trees.cxx
- multiroot_sync_subsetTrees()
: NT_syncroot.cxx
- mutateRNS()
: rns.c
- mutexDir()
: TestEnvironment.cxx
- my_strupr()
: probe_design.cxx
- mygetc()
: arb_a2ps.c