ps_node.hxx File Reference

#include <smartptr.h>
#include "ps_defs.hxx"
#include "ps_filebuffer.hxx"

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Go to the source code of this file.

Classes
struct	PS_Probe
struct	lt_probe
class	PS_Node

Typedefs
typedef SmartPtr< PS_Probe >	PS_ProbePtr
typedef set< PS_ProbePtr, lt_probe >	PS_ProbeSet
typedef PS_ProbeSet *	PS_ProbeSetPtr
typedef PS_ProbeSet::iterator	PS_ProbeSetIter
typedef PS_ProbeSet::const_iterator	PS_ProbeSetCIter
typedef SmartPtr< PS_Node >	PS_NodePtr
typedef map< SpeciesID, PS_NodePtr >	PS_NodeMap
typedef PS_NodeMap::iterator	PS_NodeMapIterator
typedef PS_NodeMap::reverse_iterator	PS_NodeMapRIterator
typedef PS_NodeMap::const_iterator	PS_NodeMapConstIterator
typedef PS_NodeMap::const_reverse_iterator	PS_NodeMapConstRIterator

Functions
void	PS_printProbe (const PS_Probe *p)
void	PS_printProbe (const PS_ProbePtr &p)

Typedef Documentation

typedef SmartPtr<PS_Probe> PS_ProbePtr

Definition at line 22 of file ps_node.hxx.

typedef set<PS_ProbePtr, lt_probe> PS_ProbeSet

Definition at line 49 of file ps_node.hxx.

typedef PS_ProbeSet* PS_ProbeSetPtr

Definition at line 50 of file ps_node.hxx.

typedef PS_ProbeSet::iterator PS_ProbeSetIter

Definition at line 51 of file ps_node.hxx.

typedef PS_ProbeSet::const_iterator PS_ProbeSetCIter

Definition at line 52 of file ps_node.hxx.

typedef SmartPtr<PS_Node> PS_NodePtr

Definition at line 53 of file ps_node.hxx.

typedef map<SpeciesID, PS_NodePtr> PS_NodeMap

Definition at line 55 of file ps_node.hxx.

typedef PS_NodeMap::iterator PS_NodeMapIterator

Definition at line 56 of file ps_node.hxx.

typedef PS_NodeMap::reverse_iterator PS_NodeMapRIterator

Definition at line 57 of file ps_node.hxx.

typedef PS_NodeMap::const_iterator PS_NodeMapConstIterator

Definition at line 58 of file ps_node.hxx.

typedef PS_NodeMap::const_reverse_iterator PS_NodeMapConstRIterator

Definition at line 59 of file ps_node.hxx.

Function Documentation

void PS_printProbe ( const PS_Probe *  p )

inline

Definition at line 24 of file ps_node.hxx.

References PS_Probe::GC_content, PS_Probe::length, and PS_Probe::quality.

Referenced by PS_Node::print(), and PS_Node::printOnlyMe().

void PS_printProbe ( const PS_ProbePtr &  p )

inline

Definition at line 28 of file ps_node.hxx.