probe_match_parser.cxx File Reference

#include "probe_match_parser.hxx"
#include <arbdbt.h>
#include <arb_defs.h>
#include <cctype>
#include <map>

Include dependency graph for probe_match_parser.cxx:

Go to the source code of this file.

Classes
struct	column
class	ProbeMatch_impl

Macros
#define	pm_assert(cond)   arb_assert(cond)

Typedefs
typedef map< const char *, column, charpLess >	ColumnMap

Functions
char *	strpartdup (const char *str, int c1, int c2)

Macro Definition Documentation

#define pm_assert

(

cond

)

arb_assert(cond)

Definition at line 22 of file probe_match_parser.cxx.

Referenced by ParsedProbeMatch::get_column_content(), ParsedProbeMatch::get_position(), ParsedProbeMatch::get_probe_region(), ProbeMatchParser::get_probe_region_offset(), ProbeMatchParser::getColumnRange(), ProbeMatchParser::is_gene_result(), ProbeMatch_impl::ProbeMatch_impl(), and strpartdup().

Typedef Documentation

typedef map<const char*, column, charpLess> ColumnMap

Definition at line 40 of file probe_match_parser.cxx.

Function Documentation

char* strpartdup ( const char *  str, int  c1, int  c2  )

inline

Definition at line 174 of file probe_match_parser.cxx.

References ARB_strndup(), and pm_assert.

Referenced by ParsedProbeMatch::get_column_content(), and ParsedProbeMatch::get_position().