di_protdist.hxx File Reference

#include <AP_seq_simple_pro.hxx>

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Classes
class	di_protdist

Typedefs
typedef double	di_aa_matrix [DI_MAX_AA][DI_MAX_AA]
typedef double	di_paa_matrix [DI_MAX_PAA][DI_MAX_PAA]
typedef char	di_bool_matrix [DI_MAX_PAA][DI_MAX_PAA]

Enumerations
enum	di_codetype {   UNIVERSAL, CILIATE, MITO, VERTMITO,   FLYMITO, YEASTMITO }
enum	di_cattype {   NONE, SIMILARITY, KIMURA, PAM,   CHEMICAL, HALL, GEORGE }

Variables
const int	DI_MAX_AA = STOP
const int	DI_MAX_PAA = UNK
const int	DI_RESOLUTION = 1000
const int	DI_MAX_DIST = 10

Typedef Documentation

typedef double di_aa_matrix[DI_MAX_AA][DI_MAX_AA]

Definition at line 28 of file di_protdist.hxx.

typedef double di_paa_matrix[DI_MAX_PAA][DI_MAX_PAA]

Definition at line 29 of file di_protdist.hxx.

typedef char di_bool_matrix[DI_MAX_PAA][DI_MAX_PAA]

Definition at line 30 of file di_protdist.hxx.

Enumeration Type Documentation

enum di_codetype

Enumerator
UNIVERSAL
CILIATE
MITO
VERTMITO
FLYMITO
YEASTMITO

Definition at line 25 of file di_protdist.hxx.

enum di_cattype

Enumerator
NONE
SIMILARITY
KIMURA
PAM
CHEMICAL
HALL
GEORGE

Definition at line 26 of file di_protdist.hxx.

Variable Documentation

const int DI_MAX_AA = STOP

Definition at line 18 of file di_protdist.hxx.

Referenced by di_protdist::di_protdist().

const int DI_MAX_PAA = UNK

Definition at line 19 of file di_protdist.hxx.

const int DI_RESOLUTION = 1000

Definition at line 20 of file di_protdist.hxx.

const int DI_MAX_DIST = 10

Definition at line 21 of file di_protdist.hxx.

Referenced by di_protdist::di_protdist().