PH_filt.cxx File Reference

#include "phylo.hxx"
#include "phwin.hxx"
#include "PH_display.hxx"
#include <arbdbt.h>
#include <aw_awar.hxx>
#include <arb_progress.h>
#include <aw_root.hxx>
#include <aw_msg.hxx>
#include <cctype>
#include <awt_config_manager.hxx>

Include dependency graph for PH_filt.cxx:

Go to the source code of this file.

Functions
static long	PH_timer ()
void	strlwr (char *s)
static void	update_on_config_change_cb (AW_root *aw_root)
static void	correct_startstop_cb (AW_root *aw_root, bool start_changed)
static void	correct_minmaxhom_cb (AW_root *aw_root, bool min_changed)
void	PH_create_filter_variables (AW_root *aw_root, AW_default default_file, GBDATA *gb_main)
AW_window *	PH_create_filter_window (AW_root *aw_root)

Variables
static AWT_config_mapping_def	phyl_filter_config_mapping []

Function Documentation

static long PH_timer ( )

static

Definition at line 22 of file PH_filt.cxx.

Referenced by PH_filter::init().

void strlwr ( char *  s )

inline

Definition at line 46 of file PH_filt.cxx.

Referenced by PH_filter::calculate_column_homology().

static void update_on_config_change_cb ( AW_root *  aw_root )

static

Definition at line 338 of file PH_filt.cxx.

References AW_root::awar(), AWAR_PHYLO_FILTER_AUTOCALC, display_status_cb(), expose_cb(), ph_calc_filter_cb(), and AW_awar::read_int().

Referenced by PH_create_filter_variables().

static void correct_startstop_cb ( AW_root *  aw_root, bool  start_changed  )

static

Definition at line 346 of file PH_filt.cxx.

References AW_root::awar(), AWAR_PHYLO_FILTER_STARTCOL, AWAR_PHYLO_FILTER_STOPCOL, AW_awar::read_int(), and AW_awar::write_int().

Referenced by PH_create_filter_variables().

static void correct_minmaxhom_cb ( AW_root *  aw_root, bool  min_changed  )

static

Definition at line 358 of file PH_filt.cxx.

References AW_root::awar(), AWAR_PHYLO_FILTER_MAXHOM, AWAR_PHYLO_FILTER_MINHOM, AW_awar::read_int(), and AW_awar::write_int().

Referenced by PH_create_filter_variables().

void PH_create_filter_variables	(	AW_root *	aw_root,
		AW_default	default_file,
		GBDATA *	gb_main
	)

Definition at line 371 of file PH_filt.cxx.

References AW_awar::add_callback(), aw_message_if(), AW_root::awar_int(), AWAR_PHYLO_FILTER_AMBIG, AWAR_PHYLO_FILTER_AUTOCALC, AWAR_PHYLO_FILTER_DOT, AWAR_PHYLO_FILTER_LOWER, AWAR_PHYLO_FILTER_MAXHOM, AWAR_PHYLO_FILTER_MINHOM, AWAR_PHYLO_FILTER_MINUS, AWAR_PHYLO_FILTER_STARTCOL, AWAR_PHYLO_FILTER_STOPCOL, correct_minmaxhom_cb(), correct_startstop_cb(), DONT_COUNT, GB_await_error(), GBT_get_alignment_len(), GBT_get_default_alignment(), ph_assert, AW_awar::set_minmax(), ta, and update_on_config_change_cb().

Referenced by create_variables().

AW_window* PH_create_filter_window

(

AW_root *

aw_root

)

Definition at line 416 of file PH_filt.cxx.

References AW_POPDOWN(), AW_ROOT_DEFAULT, AWAR_PHYLO_FILTER_AMBIG, AWAR_PHYLO_FILTER_AUTOCALC, AWAR_PHYLO_FILTER_DOT, AWAR_PHYLO_FILTER_LOWER, AWAR_PHYLO_FILTER_MAXHOM, AWAR_PHYLO_FILTER_MINHOM, AWAR_PHYLO_FILTER_MINUS, AWAR_PHYLO_FILTER_STARTCOL, AWAR_PHYLO_FILTER_STOPCOL, AWT_insert_config_manager(), COUNT_DONT_USE_MAX, DONT_COUNT, filter_text, AW_window::load_xfig(), SKIP_COLUMN_IF_MAX, SKIP_COLUMN_IF_OCCUR, TREAT_AS_REGULAR, and TREAT_AS_UPPERCASE.

Referenced by create_phyl_main_window().

Variable Documentation

AWT_config_mapping_def phyl_filter_config_mapping[]

static

Initial value:

= {
    { AWAR_PHYLO_FILTER_STARTCOL, "startcol" },
    { AWAR_PHYLO_FILTER_STOPCOL,  "stopcol" },
    { AWAR_PHYLO_FILTER_MINHOM,   "minhom" },
    { AWAR_PHYLO_FILTER_MAXHOM,   "maxhom" },
    { AWAR_PHYLO_FILTER_DOT,      "filtdot" },
    { AWAR_PHYLO_FILTER_MINUS,    "filtminus" },
    { AWAR_PHYLO_FILTER_AMBIG,    "filtambig" },
    { AWAR_PHYLO_FILTER_LOWER,    "filtlower" },

    { NULp, NULp }
}

Definition at line 403 of file PH_filt.cxx.