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Macros | |
| #define | CONSTEXPR_INLINE_Cxx14 inline |
| #define | CONSTEXPR const |
| #define | CONSTEXPR_INLINE inline |
| #define | OVERRIDE |
| #define | FINAL_TYPE |
| #define | FINAL_OVERRIDE |
| #define | NULp NULL |
| #define | FALLTHROUGH |
| #define | UNUSED __attribute__((unused)) |
| #define | PREPARE_MARK_NONFINAL_CLASS(CLASS) |
| #define | MARK_NONFINAL_CLASS(BASE) |
| #define | MARK_NONFINAL__INTERNAL(BASE, RETURN_TYPE, METHOD_NAME, PARAMS, RETURN) |
| #define | MARK_NONFINAL_DTOR(BASE) MARK_NONFINAL_CLASS(BASE) |
| #define | MARK_NONFINAL_FUNCTION(BASE, RETYPE, METHOD_NAME, PARAMS, RETVAL) MARK_NONFINAL__INTERNAL(BASE,RETYPE,METHOD_NAME,PARAMS,return RETVAL) |
| #define | MARK_NONFINAL_METHOD(BASE, METHOD_NAME, PARAMS) MARK_NONFINAL__INTERNAL(BASE,void,METHOD_NAME,PARAMS,) |
Macro Definition Documentation
| #define CONSTEXPR_INLINE_Cxx14 inline |
Definition at line 72 of file cxxforward.h.
| #define CONSTEXPR const |
Definition at line 108 of file cxxforward.h.
Referenced by AW_window::window_local_awarname().
| #define CONSTEXPR_INLINE inline |
Definition at line 111 of file cxxforward.h.
| #define OVERRIDE |
Definition at line 112 of file cxxforward.h.
| #define FINAL_TYPE |
Definition at line 113 of file cxxforward.h.
| #define FINAL_OVERRIDE |
Definition at line 114 of file cxxforward.h.
| #define NULp NULL |
Definition at line 116 of file cxxforward.h.
Referenced by _aw_create_toggle_entry(), AW_window::_create_option_entry(), AW_window::_set_activate_callback(), Reader::abort(), GB_MAIN_TYPE::abort_transaction(), AP_main::accept(), Cluster::accept_proposed(), PlugIn::activate(), ad_move_tree_info(), ad_tree_set_security(), adaptCopiedAlignment(), awt_input_mask_id_list::add(), TreeContainer::add(), add_area_for_gde(), awt_linked_to_item::add_db_callbacks(), References::add_dbid(), InfoWindow::add_detach_area(), CLI::add_filters_to(), AW_gc_manager::add_gc(), AW_gc_manager::add_gc_range(), GB_MAIN_TYPE::add_hierarchy_cb(), add_probe_to_collection_event(), add_promotion(), MG_remap::add_reference(), add_rule_cb(), FilteredExport::add_SAI_filter(), add_species_to_list_cb(), add_species_to_merge_list(), addid_changed_cb(), ArbMatchResultsManager::addResultSet(), FINAL_TYPE< SEQTYPE >::addSequence(), addSymParts(), PART::addWeightAndLength(), aisc_accept_calls(), aisc_c_send_bytes_queue(), aisc_calc_blocks(), aisc_check_error(), aisc_debug_info(), aisc_insert_hash(), aisc_link(), aisc_open(), aisc_remove_destroy_callback(), aisc_s_send_bytes_queue(), aisc_server_shutdown(), aisc_talking_copy(), aisc_talking_create(), aisc_talking_debug_info(), aisc_talking_delete(), aisc_talking_find(), aisc_talking_get(), aisc_talking_init(), aisc_talking_nset(), aisc_talking_set(), aisc_talking_sets(), aisc_unlink(), ali_aligner_cell::ali_aligner_cell(), ALI_ARBDB::ALI_ARBDB(), ali_prealigner_mask::ali_prealigner_mask(), ALI_PT::ALI_PT(), ALI_realign_marked(), ALI_TLIST< ali_pt_member * >::ALI_TLIST(), ALI_TLIST_ELEM< ali_pt_member * >::ALI_TLIST_ELEM(), ALI_translate_marked(), SEC_region::align_helix_strands(), alignCompactedTo(), LineQueue::alignInto(), alignTo(), alignToGroupConsensus(), alignToNextRelative(), AlignTwo(), AW_window::alloc_named_data_color(), an_get_short(), ED4_host::announce_current_species(), ED4_cursor::announce_deletion(), TreeNode::announce_tree_constructed(), AP_dump_index_event(), AP_initialize_codon_tables(), AP_pos_var::AP_pos_var(), AP_probe_design_event(), AP_probe_iterate_event(), AP_probe_match_event(), AP_sequence_simple_protein::AP_sequence_simple_protein(), AP_tree_edge::AP_tree_edge(), FINAL_TYPE< SEQTYPE >::AP_tree_nlen(), ap_tree_node_deleted(), QueryExpr::append(), appendComment(), appendNameAndUsedBasePositions(), SaiAciApplicator::apply(), apply_ACI(), TreeNode::apply_aci_to_remarks(), apply_auto_numeric_binop(), apply_command_to_alignment(), apply_double_binop(), apply_filters(), AW_root::apply_focus_policy(), apply_to_origin(), MatrixOrder::applyTo(), applyToItemFoundByKey(), aps_correct_filename(), arb2internal_name(), ARB_bind_global_awars(), ARB_date_string(), ARB_executable(), ARB_float_2_ascii(), ARB_format_alignment(), ARB_getenv_ignore_empty(), arb_gethostbyname(), ARB_insdel_columns(), ARB_insert_columns_using_SAI(), arb_look_and_kill_server(), arb_look_and_start_ptserver(), arb_look_and_start_server(), ARB_main(), arb_open_socket(), arb_open_tcp_socket(), arb_open_unix_socket(), ARB_path_contains_unwanted_chars(), arb_prm_menu(), arb_prm_primer(), arb_prm_read(), arb_progress::arb_progress(), arb_shell_expand(), arb_start_server(), ARB_strduplen(), ARB_strndup(), ARB_strpartdup(), ARB_textfiles_have_difflines(), arb_trace_argv(), arb_tree_species_deleted_cb(), arb_wait_for_server(), ARB_zfclose(), ARB_zfopen(), ArbMatchResult::ArbMatchResult(), ArbStringCache::ArbStringCache(), are_not_in_tree(), GBDATA::as_container(), GBDATA::as_entry(), askCopyMoveRuleset_cb(), Output::assign(), Output::assign_stdout(), auto_select_pseudo_species(), AW_advice(), aw_ask_sure(), aw_attach_widget(), AW_awar::AW_awar(), AW_cb::AW_cb(), FINAL_TYPE< SEQTYPE >::AW_clicked_polygon(), AW_clock_cursor(), aw_cp_awar_2_widget_cb(), aw_create_color_chooser_window(), AW_create_fileselection(), aw_create_font_chooser_window(), aw_create_shell(), AW_extract_directory(), AW_forget_all_window_geometry(), AW_get_font_specification(), AW_help_popup(), aw_help_search(), aw_help_show_external_format(), AW_init_color_group_defaults(), aw_initstatus(), aw_input(), AW_inputCB_draw_area(), aw_insert_default_help_entries(), aw_insert_message_in_tmp_message_delayed(), aw_install_xkeys(), aw_modal_file_selection(), AW_normal_cursor(), AW_option_menu_struct::AW_option_menu_struct(), aw_popup_exit(), AW_popup_gc_color_groups_window(), AW_popup_gc_color_range_window(), AW_popup_namesadmin_window(), aw_popup_ok(), aw_question(), aw_ref_to_title(), aw_root_init_font(), AW_save_properties(), AW_select_nameserver(), AW_server_callback(), aw_status_aborted(), aw_status_read_byte(), aw_status_read_command(), aw_status_read_int(), aw_status_timer_event(), aw_status_timer_listen_event(), aw_status_wait_for_open(), AW_toggle_field_struct::AW_toggle_field_struct(), aw_uninstall_xkeys(), aw_update_all_window_geometry_awars(), aw_update_window_geometry_awars(), AW_var_gbdata_callback_delete_intern(), AW_window_Motif::AW_window_Motif(), AW_xfig::AW_xfig(), aw_xkey_2_awkey(), awt_numeric_input_field::awar2db(), awt_string_handler::awar_changed(), awar_matrix_cell(), AW_root::awar_no_error(), AWT_activate_prompt(), awt_aps_go(), AWT_canvas::AWT_canvas(), AWT_console(), AWT_create_ascii_print_window(), awt_create_input_mask(), AWT_create_IUPAC_info_window(), awt_create_select_filter(), awt_create_select_filter_win(), awt_create_select_filter_window_aw_cb(), awt_create_select_filter_window_gb_cb(), AWT_create_www_window(), awt_get_filter(), AWT_graphic_tree::AWT_graphic_tree(), AWT_graphic_tree_node_deleted(), AWT_initialize_input_mask(), AWT_insert_DBcompression_selector(), AWT_is_codon(), AWT_look_input_mask(), AWT_modify_managed_configs(), awt_open_ACI_URL_with_item(), awt_openDefaultURL_on_selected_species(), AWT_popup_print_window(), AWT_popup_sec_export_window(), AWT_popup_tree_export_window(), awt_rename_cb(), AWT_system_cb(), AWT_system_in_console_cb(), AWT_trigger_remote_action(), AWTC_create_numbered_suffix(), AWTC_create_submission_window(), AWTC_generate_one_name(), AWTC_generate_random_name(), AWTC_makeUniqueShortName(), awtc_nn_search(), awtc_nn_search_all_listed(), AWTC_pars_names(), AWTC_recreate_name(), AWTI_activate_export_test_window(), AWTI_activate_import_test_window(), AWTI_cleanup_importer(), AWTI_import_set_ali_and_type(), AWTI_open_import_window(), backfront_stream(), GB_MAIN_TYPE::begin_transaction(), AWT_graphic_event::best_click(), BI_helix::BI_helix(), BI_pairdef::BI_pairdef(), AP_sequence::bind_to_species(), BoundTreeAwarCallback::bind_tree_callback(), binop_contains(), brute_force_find_next_species(), KeySorter::bubble_sort(), build_consensus_tree(), build_dict_tree(), build_reverse_complement(), buildAllowedValuesString(), ED4_SearchResults::buildColorString(), GenePositionMap::buildIntergeneList(), AP_tree::buildLeafList(), buildMixedCodon(), QUERY::DbQuery::buildQueryExpr(), SEC_root::buildStructureString(), cache_free_some_memory(), calc_and_update_alignment_errors_cb(), AP_tree_edge::calc_branchlengths(), calc_method_changed_cb(), calc_pvp(), AP_DefaultTreeShader::calc_shaded_inner_GC(), AP_DefaultTreeShader::calc_shaded_leaf_GC(), ST_ML::calc_st_ml(), FieldReader::calc_value(), calcGbdOffsets(), ColumnStat::calculate(), DI_MATRIX::calculate(), calculate_and_check_ranges(), calculate_clusters(), PH_filter::calculate_column_homology(), SpeciesFlags::calculate_header_dimensions(), AW_window::calculate_scrollbars(), FINAL_TYPE< SEQTYPE >::call(), gb_pending_callbacks::call_and_forget(), call_edit(), GB_MAIN_TYPE::call_pending_callbacks(), callDelay(), cannot_fast_align(), AP_tree::cantMoveNextTo(), canvas_to_printer(), canvas_to_xfig_and_run_xfig(), canvas_tree_awar_changed_cb(), Convaln_exception::catched(), change_char_table_length(), change_constraints(), VarUpdateInfo::change_from_widget(), GroupUIdata::change_listed_groups_folding(), TreeRoot::change_root(), AP_tree_root::change_root(), BaseFrequencies::changed_range(), AliInsertCommand::check_applicable_to(), AliDeleteCommand::check_applicable_to(), FINAL_TYPE< SEQTYPE >::check_applicable_to(), check_argument_for_mode(), Importer::check_base_counters(), TrackedFiles::check_changes(), AliData::check_delete_allowed(), check_delete_allowed(), probe_combi_statistic::check_duplicates(), check_for_remote_command(), GBL_IMPL::check_has_parameters(), FieldTransfer::WriteRule::check_hkey(), ED4_manager::check_in_bases(), GBL_IMPL::check_item_referenced(), check_key(), SaiCalcEnv::check_lengths_equal(), GBL_IMPL::check_no_parameter(), GBL_IMPL::check_optional_parameters(), ED4_manager::check_out_bases(), check_out_buffer(), GBL_IMPL::check_parameters(), check_server_selected(), check_socket_available(), check_valid_existing_fts(), GBL_IMPL::check_valid_index(), check_valid_target_fts(), GroupMatchScorer::check_validity(), checkAndMergeFields(), ChecksumCollector::checksum(), checkValidIndex(), CI_GetDefaultInfo_1D(), CI_GetDefaultInfo_2D(), ckalloc(), ST_ML::cleanup(), probe_struct_global::cleanup(), cleanupResizeEvents(), AW_root_cblist::clear(), ED4_reference::clear(), AW_selection_list::clear(), MemBlockManager::clear(), MostUsedPos::clear(), ED4_container::clear(), clear_all_colors(), AliData::clear_error(), Realigner::clear_failure(), POS_TREE1::clear_fathers(), clear_found_attribute(), AW_window::clear_option_menu(), GroupUIdata::clear_result_list(), clear_temp_flags(), clearMacroExecutionAuthorization(), CLI::CLI(), ClickedTarget::ClickedTarget(), BufferedPipeReader::close(), Cluster::Cluster(), collectKeysRegisteredInDatabase(), color_group_name_changed_cb(), colorgroupname_awarname(), colorize_marked_cb(), colorize_queried_cb(), colorTransTable_exists(), colstat_2_gnuplot_cb(), GB_MAIN_TYPE::commit_transaction(), ED4_remap::compile(), DI_MATRIX::compress(), compress_sequence_tree(), CON_calc_max_freq(), CON_calculate(), concatenateAlignments(), concatenateFieldsCreateNewSpecies(), config_comment_changed_cb(), config_modified_cb(), configure_macro_recording(), configureColumnStat(), NameServerConnection::connect(), ED4_base::containing_species_manager(), Range::contains(), contains_wildcards(), SmartPtr< PS_Node >::content(), content_matrix_cell(), convert_case(), FieldTransfer::convertAndWrite(), PrimerDesign::convertTreesToLists(), copy_field_into_partial_alignments(), copy_move_del_alignment(), copy_rename_cb(), copy_SAI_cb(), copy_SAI_to_species_cb(), QUERY::copy_selection_list_2_query_box(), copyMoveRuleset_cb(), correct_managed_configsets_cb(), ED4_sequence_terminal::corresponding_columnStat_terminal(), FINAL_TYPE< SEQTYPE >::corresponding_sequence_terminal(), count_by_tab(), count_field_occurrence(), FormatReader::create(), SequenceHandler::create(), create_ali_cb(), create_ali_intEntry(), create_ali_strEntry(), WeightedFilter::create_aliview(), TreeAdmin::create_awars(), create_AWTC_export_window(), AW_window::create_button(), create_color_button(), QUERY::create_colorize_items_window(), create_colorize_queried_window(), create_colorize_window(), create_colorTranslationTable_window(), FormatTester::create_common_gui(), create_concatInfo_SAI(), create_consense_tree_cb(), create_data_entry(), SEC_root::create_default_bone(), AW_window::create_devices(), create_dll_public(), create_editColorTranslationTable_window(), create_family_settings_window(), ED4_root::create_first_window(), AW_gc_manager::create_gc_buttons(), AW_xfig::create_gcs(), LocationEditor::create_GEN_position_from_fields(), create_gene_species(), create_genelike_entry(), create_group_rename_window_cb(), create_group_search_awars(), create_group_species_by_field_window(), create_helix_props_window(), ED4_root::create_hierarchy(), AW_window::create_input_field(), AW_window::create_input_field_with_scaler(), AP_userdef_matrix::create_input_fields(), create_insertDeleteBySAI_window(), create_insertDeleteColumn_window(), create_island_hopping_window(), create_loadsave_colored_window(), create_macro_variables(), create_mark_by_refentries_window(), create_mark_menu_entry(), create_mark_menu_id(), create_matrix_settings_window(), create_mg_merge_tagged_fields_window(), AW_window::create_mode(), create_modify_fields_window(), create_new_input_mask(), create_new_mask_cb(), create_new_species(), Generation::create_next_generation(), create_next_neighbours_listed_window(), create_next_neighbours_selected_window(), create_next_SAI(), AW_window::create_option_menu(), create_phyl_main_window(), create_primer_design_variables(), create_primer_design_window(), create_print_awars(), create_probe_collection_window(), create_probe_design_variables(), create_probe_match_specificity_control_window(), create_probe_match_window(), create_probe_match_with_specificity_window(), QUERY::create_query_box(), create_ref_db_selection_window(), create_ref_hash(), RefEntries::create_refentries_window(), MP_Window::create_result_window(), create_SAI_group_window(), AW_window::create_selection_list(), DBUI::create_species_query_window(), create_split_gene(), AW_window::create_text_field(), AW_window::create_toggle_field(), create_tree_bootstrap_settings_window(), create_tree_expert_settings_window(), create_trees_var(), WeightedFilter::create_weights(), createCallOnSocketHost(), CreateChangeMolecule_window(), createCopy_table_handler(), createDataFromConsensus(), createDisplayField_window(), CreateDisplayHelices_window(), createGroupFromSelected(), createMergeSimilarSpeciesWindow(), createOptimizeWindow(), CreateRNA3DMainWindow(), EXP_item_type_species_selector::current(), FINAL_TYPE< SEQTYPE >::current(), GEN_item_type_species_selector::current(), current_field_awar(), TopologyShader::customize(), ItemFieldShader::customize(), cut_dtree(), cut_useless_words(), Data::Data(), dated_info(), QUERY::DbQuery_update_list(), DecisionTree::DecisionTree(), ConfigMapping::decode_escapes(), decodeEscapes(), RootSynchronizer::deconstruct_all_trees(), DeconstructedTree::deconstruct_weighted(), ColorGroupDef::defaultColorgroupName(), ScrollSynchronizer::define_dependency(), del_rule_cb(), del_tree(), AP_pos_var::delete_aliEntry_from_SAI(), AW_selection_list::delete_default(), ALI_TLIST< T >::delete_element(), AW_selection_list::delete_element_at(), FamilyFinder::delete_family_list(), GroupSearch::delete_found_groups(), FoundGroup::delete_from_DB(), delete_g_b_undo_header(), delete_kept_ghostnodes(), ED4_folding_line::delete_member(), FINAL_TYPE< SEQTYPE >::delete_pointer_2(), delete_queried_species_cb(), TreeAdmin::delete_tree_cb(), delete_unused_changekeys(), deleteColorTranslationTable(), ED4_manager::deleted_from_database(), ED4_sequence_terminal::deleted_from_database(), deleteDataOfKey(), Structure3D::DeleteOldInsertionData(), Structure3D::DeleteOldMoleculeData(), Structure3D::DeleteOldSpeciesData(), DBwriter::deleteStaticData(), deleteSuperfluousQuicksaves(), AP_tree_edge::destroy(), destroy_AW_root(), ResourceStack::destroy_edges(), GBDATA::destroy_extended(), MP_Main::destroy_probe_eval(), detect_bitmap_size(), detect_current_ref_terminal(), ArbImporter::detect_format(), detect_sina_version(), ArbImporter::detectAvailableFields(), detectBrowserCommand(), detectProperties(), export_sequence_data::detectVerticalGaps(), di_autodetect_callback(), di_calculate_compressed_matrix_cb(), di_calculate_full_matrix_cb(), di_calculate_matrix(), di_calculate_tree_cb(), DI_create_cluster_detection_window(), DI_create_matrix_variables(), DI_create_save_matrix_window(), DI_create_view_matrix_window(), di_exit(), di_mark_by_distance(), di_protdist::di_protdist(), di_recalc_matrix(), di_view_matrix_cb(), diff_type_changed_cb(), AW_click_cd::disable(), NameServerConnection::disconnect(), disexpectField(), Group::dislocate(), BootstrapConfig::display_remark(), distribute_xdata(), do_extract_words(), do_sth_with_species(), BufferedPipeReader::dont_close(), dot_missing_bases(), dot_sequence_by_consensus(), Dots::Dots(), ED4_terminal::draw_drag_box(), SEC_drawn_positions::drawn_at(), SEC_drawn_positions::drawn_at_or_after(), dump_internal(), probe_combi_statistic::duplicate(), List< Type >::duplicate_list(), ED4_abstract_sequence_terminal::ED4_abstract_sequence_terminal(), ED4_base::ED4_base(), ED4_build_group_manager_start(), ed4_changesecurity(), ED4_configure_species_flags(), ED4_consensus_definition_changed(), ED4_consensus_sequence_terminal::ED4_consensus_sequence_terminal(), ed4_create_all_awars(), ED4_create_consensus_definition_window(), ED4_create_faligner_window(), ED4_create_loadConfiguration_window(), ED4_create_loadSAI_window(), ED4_create_nds_window(), ED4_create_new_seq_window(), ED4_create_saveConfigurationAs_window(), ED4_create_search_awars(), ED4_create_seq_colors_window(), ED4_create_sequences_for_gde(), ED4_create_viewDifferences_window(), ED4_CreateProteinViewer_window(), ED4_createVisualizeSAI_window(), ED4_cursor::ED4_cursor(), ED4_find_MoreSequences_manager(), ED4_find_SAI_name_terminal(), ED4_find_species_name_terminal(), ED4_find_species_or_SAI_name_terminal(), ED4_finish_and_show_notFoundMessage(), ED4_get_marked_from_menu(), ED4_getSaiColorString(), ED4_jump_to_cursor_position(), ED4_load_new_config(), ED4_new_editor_window(), ED4_no_dangerous_modes(), ED4_orf_terminal::ED4_orf_terminal(), ED4_pfold_calculate_secstruct_match(), ED4_pfold_predict_structure(), ED4_pfold_set_SAI(), ED4_popup_detect_bad_alignment_window(), ED4_popup_dot_missing_bases_window(), ED4_popup_gc_window(), ED4_popup_helix_or_pfold_window(), ED4_repeat_last_search(), ED4_search_cb(), ED4_SearchPosition::ED4_SearchPosition(), ED4_SearchResults::ED4_SearchResults(), ED4_sequence_terminal::ED4_sequence_terminal(), ED4_set_protection(), ED4_setColumnblockCorner(), ED4_show_protein_match_on_device(), ED4_species_pointer::ED4_species_pointer(), ED4_toggle_detailed_column_stats(), ed_submit_info_event(), EdgeChain::EdgeChain(), ED4_Edit_String::edit(), edit_SAI_description(), embl_correct_title(), encodeEntities(), ensure_trees_have_order(), enter_stage_1_build_tree(), AWT_configuration::erase_deleted_configs(), arb_progress::error_if_aborted(), etog_journal(), Expression::evalVarDecl(), ED4_terminal::event_sent_by_parent(), ProbeValuation::evolution(), MacroRecorder::execute(), execute_guarded_ClientCode(), execute_macro(), executeKeystroke(), existingPixmap(), exit_removal(), EXP_create_experiment_query_window(), EXP_find_experiment_by_id(), EXP_get_current_experiment(), EXP_get_first_experiment_data(), EXP_get_next_experiment_data(), EXP_popup_experiment_window(), expand_symbolic_directories(), expandBranches(), expandSetVariables(), expect_used_in_genome_db(), arb_test::expectation_group::expectation_group(), expectContent(), expectField(), expectToken(), experiment_rename_handler(), SEQIO::export_by_format(), export_filename_changed_cb(), export_format_multiple(), export_format_single(), export_go_cb(), export_nds_cb(), export_newick(), export_seq_data(), export_species_using_form(), export_structure_to_file(), export_to_DB(), export_tree_label(), export_tree_node_print(), export_tree_node_print_xml(), export_write_species(), DI_MATRIX::extract_from_tree(), extract_url_host(), extractKeyword(), FastSearchSequence::fast_align(), AWT_graphic_tree::fast_sync_changed_folding(), FastAligner_create_window(), FastAligner_delete_temp_entries(), FastAligner_start(), FastAlignInsertion::FastAlignInsertion(), FastAlignReport::FastAlignReport(), SEQIO::fgets_smartLF(), field_create_cb(), file_selection_cb(), File_selection::filename_changed(), filename_changed_cb(), Itemfield_Selection::fill(), File_selection::fill(), EDB_root_bact::fill_data(), MO_Liste::fill_marked_bakts(), fillSelNamList(), filter_columnstat_SAIs(), filter_loadable_SAIs(), filter_posvar_SAI_for_ali(), RefEntries::RefSelector::filter_refs(), DBwriter::finalizeOrganism(), InfoWindowRegistry::find(), RegFieldSelection::find(), ArbProbeCollection::find(), SEC_root::find(), SpecSetRegistry::find_best_matches_info(), GroupBuilder::find_best_matching_subtree(), RootSynchronizer::find_best_root_candidate(), ALI_PT::find_family(), ED4_manager::find_first_that(), find_gbdata_offset(), RootSynchronizer::find_good_roots_for_trees(), find_group_name_entry(), find_hash_entry(), DeconstructedTree::find_innermost_part(), find_internal_name(), find_largest_tree(), find_least_deep_leaf(), InfoWindowRegistry::find_maininfo_of_same_type_as(), find_module(), ST_ML::find_node_by_name(), find_node_with_groupdata(), find_or_create(), find_or_createAndRegisterWindow(), AWT_configuration::find_predefined(), Data::find_qualified_token(), InfoWindowRegistry::find_reusable_of_same_type_as(), find_sub_by_quark(), find_sub_sub_by_quark(), Data::find_token(), findAffectedKeys(), findAutomarkingBranchWindow(), ProbeMatch_impl::findColumn(), findItemShader(), TreeNode::findLeafNamed(), findLongestHelix(), findNode(), findParentGroup(), findPlugin(), ArbMatchResultsManager::findResultSet(), findSegmentContaining(), findStrain(), findSubspecies(), Structure3D::FindTypeOfRNA(), FINAL_TYPE< SEQTYPE >::finish(), ArbDBWriter::finishSave(), first_experiment_in_range(), first_gene_in_range(), keychar_table::first_non_key_character(), FINAL_TYPE< SEQTYPE >::firstListMember(), FINAL_TYPE< SEQTYPE >::firstWithLessIndentThan(), fit_pages(), TreeNode::fixDeletedSon(), SearchFIFO::flush(), flush_taxonomy_cb(), ED4_group_manager::fold(), AW_window::force_expose(), force_group_update(), ColumnStat::forget(), SpeciesFlags::forget(), forget_cached_column_stat(), TreeNode::forget_origin(), TreeNode::forget_relatives(), BoundActionTracker::forgetDatabase(), CheckedConsistencies::forgetDoneChecks(), ImportTestData::forgetLastImport(), format(), format2name(), formatted(), GBENTRY::free_data(), freeBlock_(), freeSymParts(), ID_checker::fromKey(), fullMacroname(), g_b_check_undo_size2(), g_b_count_leafs(), g_b_opti_createGbdByKey(), g_b_undo(), g_b_undo_info(), g_bcms_delete_Socinf(), g_bs_convert_string_to_tagged_hash_with_rewrite(), g_bs_free_hash_of_hashes(), gb_abort_entry(), gb_abortdata(), gb_add_callback(), gb_add_reference(), GB_await_error(), gb_build_uncompress_tree(), gb_cache_genome(), GB_canonical_path(), GB_check_hkey(), gb_check_huffmann_tree(), GB_check_out_buffer(), GB_child(), GB_clear_macro_error(), GB_clear_temporary(), GB_clone(), gb_clone_explicit(), GB_close(), GB_command_interpreter(), GB_command_interpreter_in_env(), gb_commit_transaction_local_rek(), gb_compress_by_dictionary(), gb_compress_data(), gb_compress_huffmann(), gb_compress_huffmann_add_to_list(), GB_concat_path(), gb_convert_compression(), gb_convert_V2_to_V3(), gb_copy_explicit(), GB_copy_file(), GB_create(), GB_create_container(), gb_create_dictionaries(), gb_create_dictionary(), GB_create_directory(), GB_create_index(), GB_create_parent_directory(), gb_create_reference(), gb_del_ref_and_extern_gb_transaction_save(), GB_delete_database(), gb_delete_dummy_father(), gb_delete_entry(), gb_delete_force(), gb_delete_main_entry(), gb_delete_reference(), GB_disable_path(), gb_disable_undo(), GB_dump_no_limit(), GB_end_transaction(), GB_ensure_callback(), GB_existing_file(), GB_exit_gb(), gb_expect_type(), GB_find(), GB_find_all_files(), gb_find_by_nr(), GB_find_executable(), gb_find_internal(), GB_find_latest_file(), GB_find_sub_by_quark(), gb_findExtension(), GB_finish_stream_save(), GB_first_marked(), gb_fix_recursive(), GB_follow_unix_link(), GB_following_marked(), GB_fopen_tempfile(), gb_free_all_undos(), gb_free_dictionary(), GB_FREE_TRANSACTION_SAVE(), gb_full_path(), GB_get_arb_revision_tag(), GB_get_callback_info(), GB_get_db_path(), gb_get_dictionary(), GB_get_dictionary(), GB_get_gb_main_during_cb(), GB_get_GBDATA_path(), GB_get_grandfather(), GB_get_macro_error(), GB_get_subfields(), GB_getcwd(), GB_getenvARB_GS(), GB_getenvARB_PDFVIEW(), GB_getenvARB_XCMD(), GB_getenvARB_XTERM(), GB_getenvARBMACRO(), GB_getenvDOCPATH(), GB_getenvHTMLDOCPATH(), GB_getenvPATH(), GB_getenvUSER(), GB_increase_buffer(), GB_incur_error(), GB_incur_error_if(), gb_index_find(), gb_info(), GB_install_pid(), GB_is_dictionary_compressed(), gb_is_valid_mapfile(), gb_load_dictionary_data(), gb_load_key_data_and_dictionaries(), gb_load_single_key_data(), gb_local_data::gb_local_data(), GB_log_fak(), GB_login(), GB_MAIN_TYPE::GB_MAIN_TYPE(), gb_make_main_idx(), GB_map_FILE(), GB_map_file(), gb_map_mapfile(), GB_move_file(), GB_nextChild(), GB_optimize(), gb_parse_ascii(), gb_parse_ascii_rek(), GB_read_as_string(), GB_read_as_tagged_string(), gb_read_ascii_beyond_header(), gb_read_bin(), gb_read_bin_rek_V2(), GB_read_bits(), GB_read_bits_pntr(), GB_read_bytes(), gb_read_cache(), gb_read_dict_data(), GB_read_file(), GB_read_floats(), GB_read_floats_pntr(), GB_read_from_floats(), GB_read_from_ints(), GB_read_ints(), GB_read_ints_pntr(), GB_read_old_value(), GB_read_string(), gb_recover_corrupt_file(), GB_release(), gb_remembered_db(), gb_remove_quick_saved(), GB_request_undo_type(), GB_resort_data_base(), gb_resort_system_folder_to_top(), GB_safe_atof(), GB_safe_copy_file(), GB_safe_rename_file(), GB_save_as(), gb_save_dictionary_data(), gb_save_extern_data_in_ts(), gb_save_mapfile(), gb_scan_directory(), gb_search(), gb_search_marked(), gb_search_system_folder_rek(), GB_searchOrCreate_float(), GB_searchOrCreate_int(), GB_searchOrCreate_string(), GB_set_cache_size(), gb_set_compression(), GB_set_dictionary(), GB_set_macro_error(), GB_set_mode_of_file(), GB_set_time_of_file(), GB_set_undo_mem(), gb_set_undo_sync(), gb_set_undo_type(), GB_split_full_path(), GB_symlink(), gb_system_key_changed_cb(), gb_system_master_changed_cb(), GB_tell_server_dont_wait(), GB_test_delete_possible(), GB_time_of_day(), gb_transactable_type(), GB_TYPES_2_name(), gb_uncompress_by_dictionary(), gb_uncompress_by_sequence(), gb_uncompress_data(), gb_uncompress_huffmann(), gb_uncompress_longs_old(), GB_undo(), GB_undo_info(), gb_unfold(), gb_unlink_entry(), gb_write_bin_rek(), GB_write_bits(), GB_write_byte(), gb_write_compressed_pntr(), GB_write_float(), gb_write_index_key(), GB_write_int(), gb_write_one_child(), GB_write_pntr(), GB_write_pointer(), GB_write_security_delete(), GB_write_security_levels(), GB_write_security_read(), GB_write_security_write(), GB_write_string(), gbcm_login(), gbcm_logout(), gbcm_read_bin(), gbcm_read_string(), gbcm_unfold_client(), gbcm_write_bin(), gbcmc_abort_transaction(), gbcmc_begin_sendupdate(), gbcmc_begin_transaction(), gbcmc_commit_transaction(), gbcmc_end_sendupdate(), GBCMC_find(), gbcmc_init_transaction(), gbcmc_key_alloc(), gbcmc_open(), gbcmc_read_keys(), gbcmc_send_undo_commands(), gbcmc_send_undo_info_commands(), gbcmc_sendupdate_delete(), gbcmc_unfold_list(), GBCMS_accept_calls(), gbcms_add_to_delete_list(), GBCMS_open(), gbcms_sighup(), gbcms_talking_begin_transaction(), gbcms_talking_find(), gbcms_talking_init_transaction(), gbcms_talking_put_update(), gbcms_talking_undo(), gbcms_talking_unfold(), GBCONTAINER_ELEM(), GBK_assert_msg(), GBK_system(), GBK_test_address(), gbl_and(), gbl_apply_binary_operator(), gbl_change_gc(), gbl_checksum(), gbl_colsplit(), gbl_command(), gbl_crop(), gbl_cut(), gbl_define(), gbl_do(), gbl_drop(), gbl_dropempty(), gbl_dropzero(), gbl_echo(), gbl_escape(), gbl_eval(), gbl_exec(), gbl_extract_sequence(), gbl_extract_words(), gbl_filter(), gbl_gcgchecksum(), gbl_inRange(), gbl_isEmpty(), gbl_len(), gbl_merge(), gbl_mid_streams(), gbl_not(), gbl_or(), gbl_quote(), gbl_read_seq_sai_or_species(), gbl_readdb(), gbl_round(), gbl_select(), gbl_split(), gbl_srt(), gbl_streams(), gbl_stristr(), gbl_swap(), gbl_taxonomy(), gbl_translate(), gbl_unescape(), gbl_unquote(), gbm_get_memblk(), gbm_init_mem(), GBP_GB_alignment_type_2_charPtr(), GBP_GB_CASE_2_charPtr(), GBP_GB_SEARCH_TYPE_2_charPtr(), GBP_GB_TYPES_2_charPtr(), GBP_GB_UNDO_TYPE_2_charPtr(), GBS_add_ptserver_logentry(), gbs_build_replace_string(), GBS_compile_matcher(), GBS_compile_regexpr(), GBS_create_hash(), GBS_erase_hash(), GBS_eval_env(), GBS_fconvert_string(), GBS_find_string(), GBS_get_arb_tcp_entries(), GBS_hash_next_element_that(), GBS_merge_tagged_strings(), GBS_modify_tagged_string_with_ACI(), GBS_ptserver_id_to_choice(), GBS_read_arb_tcp(), GBS_read_dir(), GBS_regmatch(), GBS_regmatch_compiled(), GBS_regreplace(), GBS_scan_arb_tcp_param(), gbs_scan_db_insert(), GBS_string_eval(), GBS_string_eval_in_env(), GBS_string_matches_regexp(), GBS_unwrap_regexpr(), GBT_add_data(), GBT_add_new_changekey_to_keypath(), GBT_begin_rename_session(), GBT_check_alignment(), GBT_check_arb_file(), GBT_check_data(), GBT_colorset_root(), GBT_commit_rename_session(), GBT_compress_sequence_tree2(), GBT_config::GBT_config(), GBT_create(), GBT_create_alignment(), GBT_create_sequence_data(), GBT_delete_alignment(), GBT_determine_T_or_U(), GBT_find_configuration(), GBT_find_item_rel_item_data(), GBT_find_next_tree(), GBT_find_or_create_item_rel_item_data(), GBT_find_sequence(), gbt_free_rename_session_data(), GBT_gen_species_array(), GBT_get_alignment(), GBT_get_alignment_type_string(), GBT_get_changekey(), GBT_get_configuration_names(), GBT_get_name(), GBT_get_tree_name(), gbt_is_invalid(), GBT_is_partial(), gbt_link_tree_to_hash_rek(), GBT_link_tree_using_species_hash(), GBT_load_colorset(), GBT_log_to_tree_remark(), GBT_macro_execute(), GBT_message(), gbt_nonexisting_alignment(), GBT_open(), GBT_overwrite_tree(), GBT_read_as_string(), GBT_read_char_pntr(), GBT_read_float(), GBT_read_gene_sequence(), GBT_read_gene_sequence_and_length(), GBT_read_int(), GBT_read_string(), GBT_read_tree(), GBT_read_tree_and_size(), gbt_read_tree_rek(), GBT_readOrCreate_char_pntr(), GBT_readOrCreate_float(), GBT_readOrCreate_int(), GBT_readOrCreate_string(), GBT_remote_action(), GBT_remote_action_with_timeout(), GBT_remote_awar(), GBT_remote_read_awar(), GBT_remove_leafs(), gbt_rename_alignment_of_item(), GBT_rename_species(), gbt_rename_tree_rek(), GBT_restore_marked_species(), GBT_scan_db(), GBT_set_alignment_len(), GBT_set_color_group(), GBT_set_startup_alignment(), gbt_set_type_of_changekey(), GBT_splitNdestroy_string(), GBT_tree_2_newick(), GBT_tree_info_string(), gbt_wait_for_remote_action(), GBT_with_stored_species(), GBT_write_group_name(), gbt_write_tree(), GBT_write_tree(), gbt_write_tree_nodes(), gc_changed_cb(), gde_filter_weights(), GDE_menuitem_cb(), GDE_popup_filename_browser(), GDE_showhelp_cb(), GEN_create_awars(), GEN_create_gc_window(), GEN_create_gene_query_window(), GEN_create_genes_submenu(), GEN_create_map(), GEN_create_nds_vars(), GEN_create_nonexisting_gene_rel_gene_data(), GEN_create_options_window(), gen_extract_gene_2_pseudoSpecies(), GEN_find_gene(), gen_find_gene_by_id(), GEN_find_or_create_gene_rel_gene_data(), GEN_find_organism(), GEN_find_origin_gene(), GEN_find_origin_organism(), GEN_gene_container_cb_installer(), GEN_get_current_gene(), GEN_get_first_gene_data(), GEN_get_local_gene_data(), GEN_get_next_gene_data(), Sonde::gen_Hitliste(), GEN_is_genome_db(), GEN_local_lock_changed_cb(), GEN_make_node_text_nds(), GEN_mark_command(), GEN_mark_organism_or_corresponding_organism(), GEN_mode_event(), GEN_new_position(), GEN_open_nds_window(), GEN_organism_not_found(), GEN_origin_gene(), GEN_origin_organism(), GEN_perform_command(), GEN_popup_gene_infowindow(), GEN_read_position(), GEN_root::GEN_root(), GEN_sortAndMergeLocationParts(), GEN_species_add_entry(), GEN_testAndRemoveTranslations(), GEN_write_position(), genbank_get_atcc(), genbank_source(), genbank_verify_accession(), gene_changed_cb(), gene_extract_handler(), gene_rename_handler(), ED4_base::generate_configuration_string(), ArbParsimony::generate_tree(), ED4_root::generate_window(), Structure3D::GenerateTertiaryInteractionsDispLists(), genom_flag_changed(), Reference::get(), ALI_PATHMAP::get(), MetaTagTranslator::get(), ConsensusTreeBuilder::get(), ArgParser::get(), probe_input_data::get_acc(), get_active_macro_recording_tracker(), get_addid(), MO_Liste::get_all_species(), MutableBoundItemSel::get_any_item(), gb_local_data::get_any_open_db(), NtreeCommandLine::get_arg(), get_AW_ROOT_DEFAULT(), MO_Liste::get_bakt_info_by_index(), ST_Container::get_cached_sonde(), get_cached_taxonomy(), GBDATA::get_callbacks(), TREE_canvas_registry::get_canvas(), get_canvas_able_to_show(), AW_window::get_click_device(), get_Codon_Group(), ST_ML::get_color_string(), ParsedProbeMatch::get_column_content(), ED4_SearchPosition::get_comment(), AW_window::get_common(), get_COMMON_LAST(), get_COMMON_PARENT(), ED4_manager::get_competent_child(), ED4_manager::get_competent_clicked_child(), ED4_multi_species_manager::get_consensus_manager(), ED4_multi_species_manager::get_consensus_name_terminal(), ED4_base::get_consensus_relevant_terminal(), ConsensusTree::get_consensus_tree(), get_current_experiment_data(), get_current_gene_data(), RootSynchronizer::get_current_roots(), get_current_time(), get_data_n_size(), get_DB_state(), get_default_alignment(), AW_selection_list::get_default_display(), AW_selection_list::get_default_value(), ED4_manager::get_defined_level(), Deletable::get_delete_error(), get_design_hinfo(), SelectedDatabase::get_dir(), AW_selection_list_iterator::get_displayed(), get_downgroups(), ConfigMapping::get_entry(), ArbTcpDat::get_entry(), MO_Liste::get_entry_by_index(), FINAL_TYPE< SEQTYPE >::get_error(), Writer::get_error(), RegExpr::get_error(), HelixAlignmentQuality::get_error(), TrackedFiles::get_error(), export_sequence_data::get_export_sequence(), SEQIO::get_exportFormat_evalForm(), SEQIO::get_exportFormat_information(), ALI_PT::get_extension_list(), ALI_PT::get_family_list(), GBDATA::get_father(), get_file_content_for_viewer(), List< Type >::get_first(), ED4_SearchResults::get_first_at(), FINAL_TYPE< SEQTYPE >::get_first_field(), get_first_organism(), get_first_SAI(), get_first_selected_species(), get_first_species(), ED4_manager::get_first_terminal(), TextRef::get_following(), get_full_qualified_help_file_name(), get_gene_create_or_locationEdit_window(), get_gene_struct_by_arb_species_gene_name(), get_gene_struct_by_internal_gene_name(), get_group_consensus(), TreeNode::get_group_name(), get_helix_string(), GroupRename_callenv::get_hit_group(), Sonde::get_hitdata_by_number(), get_ident(), awt_input_mask_global::get_identified_item(), get_itemfield_type_awarname(), List< Type >::get_last(), ED4_SearchResults::get_last_starting_before(), ED4_manager::get_last_terminal(), get_list_part(), get_local_help_url(), get_LOCS_ERROR(), DbScanner::get_mapped_item_id(), SelectedDatabase::get_mask(), get_match_hinfo_formatted(), get_match_info_formatted(), get_match_overlay(), Sonde::get_matching_species(), List< Type >::get_member_at_pos(), List< Type >::get_member_at_pos_simple(), ST_ML::get_ml_vectors(), FoundGroup::get_name(), ED4_base::get_name_of_species(), List< Type >::get_next(), ED4_SearchPosition::get_next_at(), get_next_organism(), get_next_SAI(), get_next_SAI_data(), get_next_selected_species(), get_next_species(), get_next_species_data(), ED4_base::get_next_terminal(), get_next_tree(), Multiroot::get_node(), GBDATA::get_oldData(), PART_FWD::get_origin(), get_overlay_files(), PartRegistry::get_part(), get_physical_memory(), List< Type >::get_prev(), ED4_base::get_prev_terminal(), Pair::get_primers(), AW_window::get_print_device(), ParsedProbeMatch::get_probe_region(), RefEntries::RefSelector::get_refs(), Xfig_Eater::get_rest(), Pair::get_result(), PrimerDesign::get_result(), TreeNode::get_root_node(), AWT_graphic_tree::get_root_node(), FINAL_TYPE< SEQTYPE >::get_rootside_helix(), FINAL_TYPE< SEQTYPE >::get_rootside_strand(), ALI_ARBDB::get_SAI(), get_SAI_groups(), get_SAI_id(), ED4_host::get_search_background(), GroupUIdata::get_selected_group(), get_selected_imported_species(), get_selected_organism(), get_selected_SAI(), get_selected_species(), AW_selection_list::get_selected_value(), export_sequence_data::get_seq_data(), ALI_ARBDB::get_sequence(), ALI_ARBDB::get_sequence_string(), get_short(), ED4_SearchResults::get_shown_at(), AW_window::get_size_device(), get_source_and_check_target_tree(), get_species_id(), get_suffix(), CallbackList< gb_callback >::get_tail(), get_taxonomy(), get_taxonomy_string(), get_token(), get_token_and_incr_lineno(), get_tree_behind_idx(), get_tree_infrontof_idx(), QUERY::DbQuery::get_tree_name(), FoundGroup::get_tree_name(), ConsensusTreeBuilder::get_tree_remark(), SearchedTree::get_tree_root(), get_tree_with_idx(), get_upgroup(), Cluster::get_upgroup_info(), get_upper_lower_cursor_pos(), get_user_matrix(), AW_selection_list_iterator::get_value(), AW_selection_list::get_value_at(), get_var_string(), AW_window::get_window_size(), XString::get_x_string(), getAminoAcidAbbr(), getdecl(), GetDisplayInfo(), getenv_executable(), getenv_existing_directory(), QueryExpr::getError(), getExtension(), SEC_root::getHelixPositions(), GetImageFile(), getInt(), getLastPtrRef(), LineReader::getLine(), getNameOnly(), Reader::getNext(), getparamlist(), PS_Candidate::getParentMap(), Structure3D::GetSecondaryStructureInfo(), getSelectedRule(), getSelectedRuleset(), getString(), getxnode(), getxtip(), GI_importGenomeFile(), give_buffer(), GLE_update_from_detailFields(), GLE_update_from_location(), group_awar_changed_cb(), group_species(), GS_calc_resulting_groupname(), FINAL_TYPE< SEQTYPE >::handle_click(), AWT_graphic_tree::handle_command(), ED4_manager::handle_move(), MacroRecorder::handle_tracked_client_action(), Header::Header(), HeaderList::HeaderList(), BI_helix::helixNr(), AWT_graphic_tree::hide_marker_display(), ED4_cursor::HideCursor(), Reader::ignore_rest_of_file(), ArbImporter::import_data(), import_structure_from_file(), TreeNode::LengthCollector::independent_distribution(), GBENTRY::index_check_out(), FINAL_TYPE< SEQTYPE >::init(), PH_filter::init(), AW_window_menu_modes_opengl::init(), AP_rates::init(), GEN_map_window::init(), BI_helix::init(), BI_ecoli_ref::init(), chartable::SepBaseFreq::init(), probe_input_data::init(), AW_window_menu_modes::init(), AW_window_menu::init(), AW_window_simple_menu::init(), ED4_cursor::init(), AW_window_message::init(), init(), ED4_root::init_alignment(), init_buffer(), init_data(), RNA3D_Graphics::init_devices(), GEN_graphic::init_devices(), SAI_graphic::init_devices(), AWT_graphic_tree::init_devices(), init_flag_awars(), init_gpp(), init_local_com_struct(), init_tmp_branch(), Generation::init_valuation(), ProbeValuation::init_valuation(), BI_helix::initFromData(), AP_tree::initial_insert(), InitializeOpenGLWindow(), InitNASeq(), input_cb(), ins_ntree(), insdel_event(), insdel_sai_event(), ED4_SearchPosition::insert(), List< Type >::insert_after_current(), insert_all_species_into_tree(), List< Type >::insert_as_first(), List< Type >::insert_as_last(), List< Type >::insert_before_current(), ED4_foldable::insert_folding_line(), insert_genes_of_organism(), AW_window::insert_help_topic(), insert_interruption_to_macro_cb(), AW_window::insert_menu_topic(), insert_new_species_terminal(), insert_ntree(), insert_section_header(), List< Type >::insert_sorted_by_address_of_object(), insert_species_into_tree(), AW_window::insert_sub_menu(), insertAligned(), insertClustalValigned(), InsertDatainGDE(), Interpreter::Interpreter(), SEC_region::invalidate_base_count(), ED4_cursor::is_completely_visible(), is_dynamic(), ED4_base::is_in_folded_group(), AP_filter::is_invalid(), ED4_cursor::is_partly_visible(), is_type_word(), isCorrectParent(), FINAL_TYPE< SEQTYPE >::IslandHopping(), SizedCstr::isNull(), list_elem< Type >::isolate_list_elem(), AWT_translator::isStartOrStopCodon(), Item::Item(), FieldTransfer::ItemClonedByRuleSet::ItemClonedByRuleSet(), itemTypeSpecificWindowID(), SearchFIFO::iterateWith(), TreeNode::keelTarget(), ArbParsimony::kernighan_optimize_tree(), KeyPressEventHandler(), KeySorter::KeySorter(), AP_tree_edge::kl_rec(), known_modes(), known_modules(), AW_window::label(), AW_root::label_is_awar(), Interpreter::launch(), left_neighbour_leaf(), awt_input_handler::link_to(), link_to_tree(), ARB_seqtree_root::linkToDB(), linkxarray(), ali_prealigner_approximation::list(), List< Type >::List(), list_elem< Type >::list_elem(), ListDisplayRow::ListDisplayRow(), StorableSelectionList::load(), AWT_configuration::Load(), DI_MATRIX::load(), PHDATA::load(), PS_Node::load(), PS_Candidate::load(), load_and_add_tree(), load_and_startup_main_window(), load_cb(), AWT_graphic_tree::load_from_DB(), load_search_paras_from_file(), LoadFile(), ARB_seqtree_root::loadFromDB(), LoadMenus(), loadPositions4gene(), loadsave_colorset_cb(), AW_window::local_id(), AWT_graphic_tree::locate_selected_group(), LocationEditor::LocationEditor(), GB_MAIN_TYPE::login_remote(), lookfont(), awt_input_mask_id_list::lookup(), GBL_command_lookup_table::lookup(), ParentCache::lookupParent(), FINAL_TYPE< SEQTYPE >::Macke(), main(), AW_at_storage::make(), ALI_TLIST< ali_pt_member * >::make_empty(), FilterDefinition::make_filter(), AW_awar::make_global(), ALI_SUB_SOLUTION::make_one_map(), di_protdist::makedists(), makeSymPart(), makeTitle(), makeUniqueShortName(), AW_awar::map(), DbScanner::Map(), map_viewkeys(), Structure3D::MapCurrentSpeciesToEcoliTemplate(), Structure3D::MapSaiToEcoliTemplate(), Structure3D::MapSearchStringsToEcoliTemplate(), mark_action(), mark_as_macro_executor(), mark_nontree_cb(), mark_tree_cb(), ALI_TLIST< ali_pt_member * >::marked(), RegExpr::match(), match_string(), QueryExpr::matches(), matchingParen(), matrix_config_changed_cb(), MemBlock::MemBlock(), MemBlockManager::MemBlockManager(), memstr(), MERGE_create_main_window(), MERGE_sequences_simple(), merge_startup_abort_cb(), merge_startup_error_window(), mergeSimilarSpecies(), AW_window::message(), MG_adaptAllCopiedAlignments(), mg_check_field_cb(), MG_copy_and_check_alignments(), MG_create_current_field_content(), MG_create_db_dependent_rename_awars(), MG_create_field_content(), MG_create_merge_configs_window(), MG_create_merge_names_window(), MG_create_merge_SAIs_window(), MG_create_merge_species_window(), MG_create_merge_trees_window(), MG_create_remap(), MG_diff_strings(), MG_equal_alignments(), MG_exit(), MG_expect_renamed(), MG_export_fields(), MG_gene_species_create_field_transfer_def_window(), mg_get_selected_sai1(), mg_get_selected_sai2(), mg_get_selected_species1(), mg_get_selected_species2(), MG_save_cb(), MG_save_quick_result_cb(), MG_transfer_fields_info(), mg_transfer_listed_species(), MG_transfer_one_species(), mg_transfer_selected_species(), MG_transfer_tree(), MG_update_example(), mg_xfer_via_fts(), MO_Liste::MO_Liste(), modes_cb(), modifies_awar(), modify_fields_of_queried_cb(), modify_probe_event(), modify_target_string(), modsai_cb(), motion_event(), ED4_cursor::move_cursor(), AP_tree::move_group_to(), NodeState::move_info_to(), move_son(), AP_tree::moveNextTo(), CursorPos::moveToEnd(), MP_all_species_string(), MP_close_main(), MP_collect_probes(), MP_Comment(), MP_compute(), mp_file2list(), MP_get_comment(), MP_group_all_except_marked(), MP_init_local_com_struct(), mp_list2file(), MP_Main::MP_Main(), MP_mark_probes_in_tree(), MP_match_string(), MP_show_probes_in_tree(), MP_Window::MP_Window(), SEC_structure_toggler::name(), NameServerConnection::NameServerConnection(), NDS_create_window(), nds_delete_database_entries(), nds_maintain_viewkeys(), NDS_popup_select_srtaci_window(), nds_restore_config(), neighbourjoining(), ArbProgress::nestable::nestable(), new_dtree(), new_input_window(), new_ntnode(), new_sina_simple(), newBlock(), newIsland(), SEC_structure_toggler::next(), next_experiment_in_range(), ArbImporter::next_file(), next_gene_in_range(), export_sequence_data::next_species(), GBT_config_parser::nextItem(), FINAL_TYPE< SEQTYPE >::nextListMember(), FINAL_TYPE< SEQTYPE >::nextListMemberAfter(), nn_perform_delayed_autosearch_cb(), AP_tree_edge::nni_mutPerSite(), AP_tree_edge::nni_rec(), no_files_found_error(), GB_MAIN_TYPE::no_transaction(), Node::Node(), NodeStack::NodeStack(), NodeTextBuilder::NodeTextBuilder(), ED4_species_pointer::notify_deleted(), nt_add(), nt_add_partial(), NT_alltree_remove_leafs(), nt_best_partial_match_rec(), NT_bootstrap(), nt_build_conf_string_rek(), nt_build_sai_string(), NT_convert_gene_locations(), NT_create_alignment_admin_window(), nt_create_all_awars(), nt_create_configuration(), NT_create_consense_window(), NT_create_database_optimization_window(), NT_create_extendeds_window(), nt_create_intro_window(), NT_create_main_window(), NT_create_merge_from_window(), NT_create_merge_to_window(), NT_create_moveGroupInfo_window(), NT_create_sai_from_pfold(), NT_create_save_as(), NT_create_save_quick_as_window(), NT_create_select_alignment_window(), NT_create_species_join_window(), NT_create_splitAlignment_window(), NT_create_startEditorOnOldConfiguration_window(), NT_create_syncroot_window(), NT_createConcatenationAwars(), NT_createMergeSimilarSpeciesAndConcatenateWindow(), NT_createMergeSimilarSpeciesWindow(), NT_database_optimization(), NT_del_mark_move_REF(), nt_delete_database(), NT_delete_mark_all_cb(), NT_deselect_group(), nt_disconnect_from_db(), NT_edit_bootstrap(), nt_extract_configuration(), NT_fix_dict_compress(), NT_fix_gene_data(), NT_format_all_alignments(), NT_generate_tree(), NT_get_canvas_showing_tree(), NT_get_tree_root_of_canvas(), NT_import_sequences(), NT_importValidNames(), NT_infomode_cb(), NT_insert_mark_submenus(), nt_intro_start_existing(), nt_intro_start_import(), NT_jump_cb(), NT_mark_all_cb(), NT_mark_duplicates(), NT_move_boot_branch(), NT_reinit_treetype(), NT_reload_tree_event(), nt_rename_configuration(), NT_repair_DB(), NT_rerepair_DB(), NT_resort_data_by_phylogeny(), nt_seq_load_cb(), NT_set_tree_style(), nt_species_join(), nt_start_2nd_arb(), NT_suggestValidNames(), NT_with_displayed_tree_do(), ntree_cleanup(), NTREE_move_tree_info(), BaseFrequencies::ok(), old_decode_xstring_rel_helix(), AP_main::open(), PH_root::open(), open_aisc_server(), SelectedDatabase::open_db_for_merge(), openMaskWindowByType(), ArbMatchResultsManager::openResultsFile(), ArbProbeCollection::openXML(), revcomp_op::operate(), SEC_base_part_iterator::operator++(), SEC_strand_iterator::operator++(), CharPtrArray::operator[](), ALI_PATHMAP::optimize(), ali_aligner_dellist::optimize(), ArbParsimony::optimize_tree(), originalGroupName(), overwriteSelectedRule(), SAI_graphic::paint(), Pair::Pair(), pars_check_size(), pars_exit(), pars_generate_aliview(), PARS_infomode_cb(), pars_start_cb(), AttributeParser::parse(), parse_CMD_RADIO(), gc_desc::parse_decl(), parse_env_mem_definition(), parse_names_into_gene_struct(), Parser::parse_program(), parse_quoted_string(), parse_remark(), parse_treelabel(), parseCommandLine(), parseCSV(), parseFontString(), ConfigMapping::parseFrom(), ParseMenus(), Parser::Parser(), Parser::parseTokenListBlock(), pd_export_pt_server(), pd_get_the_gene_names(), pd_kill_pt_server(), pd_query_pt_server(), SEC_root::perform_autoscroll(), perform_block_operation_on_part_of_sequence(), perform_block_operation_on_whole_sequence(), perform_query_cb(), GroupSearch::perform_search(), PG_initSpeciesMaps(), ph_check_initialized(), PH_create_ml_multiline_SAI(), PH_save_ml_cb(), PH_save_ml_multiline_cb(), AP_STACK< AP_tree_nlen >::pop(), PrintMaybe::pop(), GB_MAIN_TYPE::pop_transaction(), AWT_configuration::popup_edit_window(), popup_group_clusters_window(), popup_group_search_window(), popup_interrupt_macro_window_cb(), popup_macro_window(), popup_new_main_window(), popup_probe_design_result_window(), popup_rule_definition_window(), popup_ruleset_admin_window(), popup_single_field_transfer_window(), popup_speciesOrganismWindow(), popup_tree_admin_window(), popupSaiProbeMatchWindow(), FINAL_TYPE< SEQTYPE >::predecessor(), prepare_and_get_selected_itemfield(), SpeciesFlag::prepare_itemfield(), primer_design_event_go(), primer_design_event_init(), primer_design_event_update_memory(), print_promotions(), ColorMap::printUserColorDefinitions(), probe_collection_load_prompt(), probe_collection_save_prompt(), probe_combi_statistic::probe_combi_statistic(), probe_common_send_data(), probe_design_event(), probe_design_send_data(), probe_match_event(), probe_match_send_data(), probe_match_with_specificity_event(), ProbeMatch_impl::ProbeMatch_impl(), propertyName(), protect_corruption_error(), PS_BitMap::PS_BitMap(), FINAL_TYPE< SEQTYPE >::PS_BitMap_Counted(), PS_BitSet::PS_BitSet(), FINAL_TYPE< SEQTYPE >::PS_BitSet_Fast(), PS_Candidate::PS_Candidate(), PS_extract_probe_data(), PS_Node::PS_Node(), PT_add_to_chain(), PT_init_input_data(), PT_prepare_species_sequence(), PT_read_son< POS_TREE1 >(), PT_read_son< POS_TREE2 >(), pt_sort_match_list(), PT_unknown_names(), PTD_delete_saved_node(), PTD_read_leafs_from_disk(), ptpd_read_names(), PTserverConnection::PTserverConnection(), SearchFIFO::push(), GB_MAIN_TYPE::push_transaction(), FINAL_TYPE< SEQTYPE >::put(), ConstStrArray::put(), PartRegistry::put_artificial_part(), PartRegistry::put_part_from_complete_tree(), PV_CreateAllTerminals(), PV_HideAllTerminals(), PV_WriteTranslatedSequenceToDB(), PVP_calculate(), quick_scan_input_mask(), quoted_if_containing_separator(), range_changed_cb(), react_to_command(), var_ref::read(), read_aisc_file(), MarkerDisplay::read_cache(), ArbImporter::read_data(), SEC_root::read_data(), read_export_format(), ArbImporter::read_format(), read_import_format(), ArbImporter::read_line(), AW_awar::read_pointer(), SEQIO::read_string_pair(), read_tree_and_size_internal(), readable_probe(), readable_pt_servername(), FINAL_TYPE< SEQTYPE >::readable_type(), readACC(), readAndWrite(), ReadArbdb(), ReadArbdb2(), readCompactedSequence(), Structure3D::ReadCoOrdinateFile(), Reader::Reader(), readFirstCompressedDataOf(), ReadGen(), readLine(), readXmlTree(), Realigner::realign_seq(), ED4_manager::rebuild_consensi(), rebuild_consensus(), db_interrupt_data::reconfigure(), RecordingMacro::RecordingMacro(), recursiveNNI(), GroupUIdata::refill_result_list(), AW_selection_list::refresh(), AW_window::refresh_option_menu(), AW_window::refresh_toggle_field(), Refs< GenbankRef >::Refs(), CheckedConsistencies::register_as_performed(), registerItemShader(), Regroup(), relative_inside(), PartialSequence::release(), GB_MAIN_TYPE::release_main_idx(), AP_tree::relink(), PH_NEIGHBOUR_DIST::remove(), AW_root_cblist::remove(), awt_input_mask_id_list::remove(), ED4_SearchPosition::remove(), AP_tree::REMOVE(), Store_species::remove(), remove_advice_id(), AW_root::remove_button_from_sens_list(), remove_by_tab(), ED4_terminal::remove_callbacks(), remove_dup_colors(), ED4_list< T >::remove_elem(), List< Type >::remove_first(), remove_from_consensus(), ED4_root::remove_from_highlighted(), GB_MAIN_TYPE::remove_hierarchy_cb(), awt_input_mask_global::remove_id(), List< Type >::remove_last(), ED4_container::remove_member(), List< Type >::remove_member_from_list(), awt_mask_item::remove_name(), List< Type >::remove_pos_from_list(), remove_redundant_translation(), remove_word_from_dtree(), PS_Node::removeProbes(), removeSubsequentString(), rename_both_databases(), rename_SAI_cb(), renameDB(), reorder_configs_cb(), reorder_keys(), reorder_trees_cb(), reorder_up_down(), ARB_seqtree::replace_seq(), ReplaceArgs(), request_terminal_refresh(), reserve_tree_idx(), LineReader::reset(), AWT_configuration::Reset(), HeaderList::reset(), ED4_foldable::reset(), FINAL_TYPE< SEQTYPE >::reset(), ParentGroupNameQueryKey::reset(), ED4_root::reset_consensus_params(), FilteredExport::reset_required_baseCount(), AW_awar::reset_to_default(), resolve_IUPAC_target_string(), ED4_base::resolve_pointer_to_char_pntr(), ED4_terminal::resolve_pointer_to_char_pntr(), ED4_base::resolve_pointer_to_string_copy(), AWT_configuration::Restore(), restore_colorset_representation(), restore_mark(), AP_pos_var::retrieve(), reverseComplement(), SpoolableString::rgb(), RotateMoleculeStateChanged(), rule_stack_cb(), AWT_graphic_tree::ruler_awar(), run_command(), run_help_cb(), run_rnacma(), run_test(), safe_write(), SAI_popup_calculator_window(), saicalc_edit_method_cb(), saiChanged_callback(), StorableSelectionList::save(), AWT_configuration::Save(), DI_MATRIX::save(), AP_pos_var::save_aliEntry_to_SAI(), save_cb(), KeySorter::save_changes(), EDB_root_bact::save_current_config(), save_messagebox_content_to(), AW_root::save_properties(), GB_MAIN_TYPE::save_quick(), GB_MAIN_TYPE::save_quick_as(), save_search_paras_to_file(), AWT_graphic_tree::save_to_DB(), save_tree_as_newick(), GBT_config::saveAsOver(), saveChangedRuleset(), ArbDBWriter::saveFromTill(), FieldTransfer::RuleSet::saveTo(), parameters::scan(), scan_gene_positions(), scan_optional_parameter(), scan_string_or_keyword_parameter(), ItemFieldShader::scan_value_range_cb(), ExportFieldScanner::scanFields(), ED4_terminal::scroll_into_view(), scroll_sellist(), ED4_SearchResults::search(), SpecSetRegistry::search_best_match(), search_comment_for_promotion(), QUERY::search_duplicated_field_content(), ED4_manager::search_ID(), ED4_terminal::search_ID(), GBL_IMPL::search_matching_dquote(), GBL_IMPL::search_matching_parenthesis(), GBL_IMPL::search_next_separator(), EDB_root_bact::search_sequence_data_rek(), ED4_manager::search_spec_child_rek(), ED4_container::search_target_species(), search_windows::search_windows(), PT_FamilyFinder::searchFamily(), SearchFIFO::SearchFIFO(), searchParamsChanged(), SearchSettings::SearchSettings(), SearchTree::SearchTree(), SearchTreeNode::SearchTreeNode(), SEC_create_display_window(), SEC_db_interface::SEC_db_interface(), sec_expect_closing_bracket(), sec_expect_keyword_and_doubles(), sec_expect_keyword_and_ints(), SEC_foldedHelixList_to_xstring(), sec_mode_event(), SEC_new_structure(), sec_scan_doubles(), sec_scan_ints(), SEC_structure_changed_cb(), SEC_structure_toggler::SEC_structure_toggler(), SEC_sync_colors(), SEC_xstring_to_foldedHelixList(), select_cluster_cb(), SpeciesSelector::select_first(), AW_window::select_mode(), select_named_sequence_terminal(), SpeciesSelector::select_next(), selected_changed_cb(), selected_config_changed_cb(), selected_match_changed_cb(), selected_species_changed_cb(), selectedSpeciesChanged_cb(), selectLowerIslands(), selectUpperIslands(), selectValidNameFromList(), GB_MAIN_TYPE::send_update_to_server(), AW_window::sep______________(), chartable::SepBaseFreq::SepBaseFreq(), SequenceHandler::SequenceHandler(), server_load(), server_main_loop(), AW_window::set_background(), AW_window::set_bottom_area_height(), TreeNode::set_branchlength_preserving(), set_constant_fields(), set_current_as_diffRef(), set_DB_state(), AW_area_management::set_double_click_callback(), AW_area_management::set_expose_callback(), set_field_of_queried_cb(), AW_window::set_focus_callback(), BasicStatus::set_gauge(), AW_window::set_horizontal_scrollbar_left_indent(), AW_window::set_horizontal_scrollbar_position(), AW_window::set_info_area_height(), awt_mask_item::set_name(), set_parents_with_only_temp_childs_temp(), AW_window::set_popup_callback(), LocationEditor::set_pos(), set_protection_level(), set_protection_of_queried_cb(), BoundActionTracker::set_recording(), AW_area_management::set_resize_callback(), set_SAI_group(), set_suffix(), set_tree_idx(), awt_mask_awar_item::set_value(), AW_window::set_vertical_scrollbar_position(), AW_window::set_vertical_scrollbar_top_indent(), AW_window::set_window_title(), AW_window::set_window_title_intern(), SetTime(), BaseFrequencies::setup(), probe_struct_global::setup(), Globals::setup_test_postcondition(), setuptree(), setupxarray(), AWT_graphic_tree::show(), show_all_changekeys(), ED4_cursor::show_cursor_at(), AWT_graphic_tree::show_ruler(), show_sina_window(), ShowVendorInformation(), sina_start(), single2full_dtree(), Generation::single_in_generation(), ALI_PREALIGNER::solution(), ALI_ALIGNER::solutions(), Sonde::Sonde(), List< Type >::sort_list_subtract(), sort_tprobes_by(), sort_tree_by_other_tree(), AW_selection_list::sortCustom(), species_copy_cb(), species_create_handler(), species_delete_cb(), species_field_selection_list_rescan(), species_rename_handler(), species_rename_join(), split_ali_cb(), split_alignment(), split_data_into_parts(), SEC_root::split_loop(), split_stat_filename(), splitTokComment(), SQ_add_changekeys(), sq_calc_seq_quality_cb(), SQ_evaluate(), SQ_fetch_filtered_sequence(), SQ_GroupData_Impl< 6 >::SQ_GroupData_Impl(), SQ_mark_species(), SQ_pass1(), SQ_pass1_no_tree(), SQ_pass1_on_tree(), SQ_pass2(), SQ_pass2_no_tree(), SQ_pass2_on_tree(), SQ_remove_quality_entries(), st_check_cb(), st_check_cb_data::st_check_cb_data(), st_ml_add_quality_string_to_species(), st_ml_add_sequence_part_to_stat(), st_ml_check_sequence_quality(), st_ok_cb(), st_remove_entries(), standard_file2list(), standard_list2file(), start_macro_cb(), start_main_window_after_import(), Location::start_message(), start_pt_server(), MacroRecorder::start_recording(), start_SECEDIT_plugin(), ali_aligner_dellist::starts(), startup_dbserver(), startup_gui(), STAT_create_chimera_check_window(), STAT_destroy_ST_ML(), RecordingMacro::stop(), MacroRecorder::stop_recording(), Structure3D::Store2D3Dinfo(), Structure3D::Store2Dinfo(), TopologyShader::store_config(), Store_species::Store_species(), store_unused_detached_info_window_cb(), Structure3D::StoreCoordinates(), Structure3D::StoreCurrSpeciesDifference(), Structure3D::StoreHelixNrInfo(), Structure3D::StoreInsertions(), strict_resort_data_base(), stristr(), RegExpr::subexpr_match(), swap_configs(), SynchronizeColorsWithEditor(), tab(), NodeStack::take_previous_frame_data(), ARB_seqtree::take_seq(), TreeContainer::take_tree(), FINAL_TYPE< SEQTYPE >::takeAllInFrontOf(), ArbImporter::takeImportDB(), test_address_valid(), SpoolableColor::text(), toggle_consensus_display(), toggle_cursor_group_folding(), AWT_graphic_tree::toggle_group(), AW_awar::toggle_toggle(), Token::Token(), TokenList::TokenList(), TokenListBlock::TokenListBlock(), TokenMatcher::TokenMatcher(), GBL_IMPL::trace_params(), RecordingMacro::track_action(), StaticData::track_ali(), RecordingMacro::track_awar_change(), trackable_species(), trackAlignmentChanges(), transfer_field_of_listed_cb(), transfer_field_of_selected_cb(), transfer_single_field(), transfer_tree(), ScopedTransporter::transferAllIn(), FieldTransfer::Rule::transferBy(), FieldTransfer::RuleSet::transferBy(), ViaFtsTransporter::transferOne(), transform_gbd_to_leaf(), translate_gene_sequence(), translate_getInfo(), translate_removeInfo(), TranslateGeneToAminoAcidSequence(), translateSAItoColors(), DontTransportAlignment::transport(), transpro_event(), tree2newick(), TreeAdmin::tree_append_remark(), TREE_auto_jump_cb(), TreeAdmin::tree_copy_or_rename_cb(), TREE_create_marker_settings_window(), TREE_create_settings_window(), ARB_seqtree_root::tree_deleted_cb(), TREE_export_tree(), TREE_GC_changed_cb(), TREE_load(), tree_load_cb(), TREE_load_to_db(), BoundTreeAwarCallback::tree_lost(), tree_of_cached_taxonomy(), tree_renamed_cb(), tree_save_cb(), tree_size_ok(), tree_write_byte(), tree_write_float(), TREE_write_Newick(), AP_tree::tree_write_tree_rek(), TREE_write_XML(), treeReadLen(), trf_commit(), trf_link(), GB_MAIN_TYPE::trigger_delete_callbacks(), AW_window::TuneBackground(), FieldTransfer::type2str(), typefixhack(), Dict::unassignFromKey(), AP_sequence::unbind_from_species(), FieldTransfer::unconvertedWrite(), undo_entry(), AP_tree_folding::unfold(), UNITTEST_sigsegv_handler(), UnitTester::UnitTester(), AW_awar::unlink(), AP_tree_edge::unlink(), awt_linked_to_item::unlink(), FINAL_TYPE< SEQTYPE >::unlink(), TreeNode::unlink_from_DB(), TreeNode::unlink_from_father(), DI_MATRIX::unload(), BranchWindow::unmark_all(), DBUI::unquery_all(), AW_window::unset_at_commands(), SEC_root::unsplit_loop(), AW_awar::untie_all_widgets(), ArbTcpDat::update(), AW_selection_list::update(), ARB_timestamp::update(), AW_awar::update(), ED4_manager::update_bases(), ED4_manager::update_bases_and_rebuild_consensi(), RegFieldSelection::update_button_text(), update_ClrTransTabNamesList_cb(), ScrollSynchronizer::update_explicit(), update_exportTest_result_cb(), update_extension_size(), update_filter_cb(), update_format_description(), update_format_description_and_suffix(), AW_gc_manager::update_gc_font(), GroupBuilder::update_group(), update_group_folding(), AW_window::update_input_field(), AW_window::update_label(), update_location_from_GEN_position(), ST_ML::update_ml_likelihood(), AW_window::update_option_menu(), update_RangeList(), AW_window::update_scaler(), AW_window::update_scrollbar_settings_from_awars(), AW_window::update_text_field(), AW_window::update_toggle(), uprootTree(), use_editor_range_cb(), ARB_timestamp::usec_since(), test_runtool::valgrinded_system(), Location::valid(), viewkeyAwar(), warn_compression_type(), SequenceHandler::wasFound(), WeightedFilter::WeightedFilter(), FailedAt::why(), AW_root::window_hide(), RefEntries::ReferringEntriesHandler::with_all_referred_items(), AW_window::wm_activate(), word_alloc(), word_free(), NodeTextBuilder::work(), hash::write(), FilteredExport::write_fasta(), write_float_converted(), write_GBDATA(), write_int_converted(), SpecSetRegistry::write_node_information(), var_ref::write_protect(), ED4_terminal::write_sequence(), write_sequence_autoinc_alisize(), AW_scalar::write_to(), writeDefaultMaskfile(), writeHistory(), writeStringToAlignment(), writeToArb(), Xfig_Eater::Xfig_Eater(), XML_recursive(), AW_cb::~AW_cb(), AW_root::~AW_root(), AW_xfig::~AW_xfig(), Convaln_exception::~Convaln_exception(), difflineMode::~difflineMode(), ED4_base::~ED4_base(), gb_cache::~gb_cache(), GB_shell::~GB_shell(), GB_transaction::~GB_transaction(), GEN_position_mem_handler::~GEN_position_mem_handler(), GroupSearch::~GroupSearch(), Interpreter::~Interpreter(), FieldTransfer::ItemClonedByRuleSet::~ItemClonedByRuleSet(), MackeReader::~MackeReader(), MemBlock::~MemBlock(), PARSIMONY_testenv< SEQTYPE >::~PARSIMONY_testenv(), PH_root::~PH_root(), PTserverConnection::~PTserverConnection(), SEC_db_interface::~SEC_db_interface(), Sondentopf::~Sondentopf(), SpeciesSpace::~SpeciesSpace(), and TreeNode::~TreeNode().
| #define FALLTHROUGH |
Definition at line 130 of file cxxforward.h.
Referenced by ali_base_to_number(), baseCmp(), check_argument_for_mode(), ED4_remap::compile(), distribute_xdata(), gb_find_internal(), gb_set_undo_sync(), gc_changed_cb(), MERGE_sequences_simple(), MG_transfer_tree(), parse_env_mem_definition(), and reorder_trees_cb().
| #define UNUSED __attribute__((unused)) |
Definition at line 139 of file cxxforward.h.
| #define PREPARE_MARK_NONFINAL_CLASS | ( | CLASS | ) |
Definition at line 209 of file cxxforward.h.
| #define MARK_NONFINAL_CLASS | ( | BASE | ) |
Definition at line 210 of file cxxforward.h.
| #define MARK_NONFINAL__INTERNAL | ( | BASE, | |
| RETURN_TYPE, | |||
| METHOD_NAME, | |||
| PARAMS, | |||
| RETURN | |||
| ) |
Definition at line 211 of file cxxforward.h.
| #define MARK_NONFINAL_DTOR | ( | BASE | ) | MARK_NONFINAL_CLASS(BASE) |
Definition at line 216 of file cxxforward.h.
| #define MARK_NONFINAL_FUNCTION | ( | BASE, | |
| RETYPE, | |||
| METHOD_NAME, | |||
| PARAMS, | |||
| RETVAL | |||
| ) | MARK_NONFINAL__INTERNAL(BASE,RETYPE,METHOD_NAME,PARAMS,return RETVAL) |
Definition at line 219 of file cxxforward.h.
| #define MARK_NONFINAL_METHOD | ( | BASE, | |
| METHOD_NAME, | |||
| PARAMS | |||
| ) | MARK_NONFINAL__INTERNAL(BASE,void,METHOD_NAME,PARAMS,) |
Definition at line 220 of file cxxforward.h.
