MP_Window.cxx File Reference

#include "MP_externs.hxx"
#include "MultiProbe.hxx"
#include "mp_proto.hxx"
#include <awt_sel_boxes.hxx>
#include <awt_modules.hxx>
#include <aw_select.hxx>
#include <aw_file.hxx>
#include <aw_msg.hxx>
#include <aw_root.hxx>
#include <aw_awar_defs.hxx>
#include <arb_strarray.h>
#include <arb_defs.h>
#include <arb_strbuf.h>
#include <arbdbt.h>
#include <ad_cb.h>
#include <RegExpr.hxx>

Include dependency graph for MP_Window.cxx:

Go to the source code of this file.

Macros
#define	SPACED(expr)   "[[:space:]]*" expr "[[:space:]]*"

Functions
char *	gen_display (int quality, int singleMis, int ecoliPos, const char *probe)
static GB_ERROR	mp_list2file (const CharPtrArray &display, const CharPtrArray &value, StrArray &line)
static GB_ERROR	mp_file2list (const CharPtrArray &line, StrArray &display, StrArray &value)
static void	track_ali_change_cb (AW_root *, GBDATA *gb_main)
static void	MP_collect_probes (AW_window *, awt_collect_mode mode)

Variables
AW_selection_list *	selected_list
AW_selection_list *	result_probes_list
static AW_selection_list *	probelist
static char	T_or_U_for_load = 0

Macro Definition Documentation

#define SPACED

(

expr

)

"[[:space:]]*" expr "[[:space:]]*"

Definition at line 148 of file MP_Window.cxx.

Referenced by mp_file2list().

Function Documentation

char* gen_display ( int  quality, int  singleMis, int  ecoliPos, const char *  probe  )

inline

Definition at line 150 of file MP_Window.cxx.

References GBS_global_string_copy().

Referenced by mp_file2list().

static GB_ERROR mp_list2file ( const CharPtrArray &  display, const CharPtrArray &  value, StrArray &  line  )

static

Definition at line 154 of file MP_Window.cxx.

References ARB_strdup(), CharPtrArray::empty(), error(), NULp, and CharPtrArray::size().

Referenced by MP_Window::MP_Window().

static GB_ERROR mp_file2list ( const CharPtrArray &  line, StrArray &  display, StrArray &  value  )

static

Definition at line 168 of file MP_Window.cxx.

References ARB_strdup(), ARB_strndup(), ARB_strpartdup(), aw_message(), RegMatch::didMatch(), CharPtrArray::empty(), error(), RegMatch::extract(), GBS_global_string(), GBT_reverseComplementNucSequence(), gen_display(), RegExpr::get_error(), RegExpr::has_failed(), RegExpr::match(), mp_assert, NULp, CharPtrArray::size(), SPACED, string(), RegExpr::subexpr_count(), and RegExpr::subexpr_match().

Referenced by MP_Window::MP_Window().

static void track_ali_change_cb ( AW_root *  , GBDATA *  gb_main  )

static

Definition at line 294 of file MP_Window.cxx.

References aw_message(), GB_AT_UNKNOWN, GB_await_error(), GBT_determine_T_or_U(), GBT_get_alignment_type(), GBT_get_default_alignment(), mp_assert, and ta.

Referenced by MP_Window::MP_Window().

static void MP_collect_probes ( AW_window *  , awt_collect_mode  mode  )

static

Definition at line 309 of file MP_Window.cxx.

References ACM_ADD, ACM_EMPTY, ACM_FILL, ACM_REMOVE, AW_selection_list::default_is_selected(), AW_selection_list_iterator::get_displayed(), AW_selection_list::get_index_of_selected(), AW_selection_list_iterator::get_value(), AW_selection_list::insert(), AW_selection_list::move_content_to(), MP_delete_selected(), NULp, AW_selection_list::sort(), and AW_selection_list::update().

Referenced by MP_Window::MP_Window().

Variable Documentation

AW_selection_list* selected_list

Definition at line 32 of file MP_Window.cxx.

Referenced by ProbeValuation::init_valuation(), MP_compute(), MP_gen_quality(), MP_gen_singleprobe(), MP_modify_selected(), and MP_new_sequence().

AW_selection_list* result_probes_list

Definition at line 33 of file MP_Window.cxx.

Referenced by ProbeValuation::insert_in_result_list(), MP_Comment(), and MP_compute().

AW_selection_list* probelist

static

Definition at line 35 of file MP_Window.cxx.

char T_or_U_for_load = 0

static

Definition at line 166 of file MP_Window.cxx.