#include <arbdb_base.h>
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Functions | |
| GB_ERROR | PVP_calculate (GBDATA *gb_main, const char *ali_name, const char *tree_name, const char *target_SAI_name) |
Function Documentation
| GB_ERROR PVP_calculate | ( | GBDATA * | gb_main, |
| const char * | ali_name, | ||
| const char * | tree_name, | ||
| const char * | target_SAI_name | ||
| ) |
Definition at line 17 of file pvp.cxx.
References arb_assert, GB_transaction::close(), AP_pos_var::delete_aliEntry_from_SAI(), destroy(), error(), GB_AT_DNA, GB_AT_RNA, GB_AT_UNKNOWN, GB_await_error(), GBT_get_alignment_len(), GBT_get_alignment_type(), GBT_link_tree(), GBT_read_tree(), arb_progress::inc_and_check_user_abort(), NULp, AP_pos_var::retrieve(), AP_pos_var::save_aliEntry_to_SAI(), arb_progress::subtitle(), ta, tree, and WEIGHTED.
Referenced by AP_calc_pos_var_pars(), and calc_pvp().
