printable.cxx File Reference

#include "input_format.h"
#include "reader.h"
#include "ali.h"

Include dependency graph for printable.cxx:

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Macros
#define	PRTLENGTH   62

Functions
static void	printable_print_line (const char *id, const char *sequence, int start, int base_count, Writer &write)
void	to_printable (const FormattedFile &in, const char *outf)

Macro Definition Documentation

#define PRTLENGTH   62

Definition at line 5 of file printable.cxx.

Referenced by printable_print_line(), and to_printable().

Function Documentation

static void printable_print_line ( const char *  id, const char *  sequence, int  start, int  base_count, Writer &  write  )

static

Definition at line 7 of file printable.cxx.

References Writer::out(), Writer::outf(), PRTLENGTH, and str0len().

Referenced by to_printable().

void to_printable	(	const FormattedFile &	in,
		const char *	outf
	)

Definition at line 37 of file printable.cxx.

References ca_assert, FileWriter::expect_written(), Alignment::get(), Alignment::get_count(), Seq::get_id(), Seq::get_len(), Alignment::get_max_len(), Seq::get_seq(), implicated, is_gapchar(), is_input_format(), length, FileWriter::out(), PRINTABLE, printable_print_line(), PRTLENGTH, read_alignment(), seq, FileWriter::seq_done(), start, throw_conversion_not_supported(), and FormattedFile::type().

Referenced by convert().