ARB
Functions
paup.cxx File Reference
#include "input_format.h"
#include "reader.h"
#include "paup.h"
#include "ali.h"
Include dependency graph for paup.cxx:

Go to the source code of this file.

Functions

static void paup_verify_name (char *&Str)
 
static void paup_print_line (const Seq &seq, int offset, int first_line, Writer &write)
 
static void paup_print_headerstart (Writer &write)
 
static void paup_print_header_counters (Writer &write)
 
static void paup_print_header_counters (Writer &write, int total_seq, int maxsize)
 
static void paup_print_header (const Paup &paup, Writer &write)
 
void to_paup (const FormattedFile &in, const char *outf)
 

Function Documentation

static void paup_verify_name ( char *&  Str)
static

Definition at line 6 of file paup.cxx.

References str0len(), and TOKENSIZE.

Referenced by to_paup().

static void paup_print_line ( const Seq seq,
int  offset,
int  first_line,
Writer write 
)
static

Definition at line 26 of file paup.cxx.

References Seq::get_id(), Seq::get_len(), Seq::get_seq(), length, Writer::out(), Writer::outf(), and SEQLINE.

Referenced by to_paup().

static void paup_print_headerstart ( Writer write)
static

Definition at line 63 of file paup.cxx.

References Writer::out(), Writer::outf(), and today_date().

Referenced by paup_print_header(), and to_paup().

static void paup_print_header_counters ( Writer write)
static

Definition at line 70 of file paup.cxx.

References Writer::outf().

Referenced by paup_print_header(), and to_paup().

static void paup_print_header_counters ( Writer write,
int  total_seq,
int  maxsize 
)
static

Definition at line 73 of file paup.cxx.

References Writer::outf().

static void paup_print_header ( const Paup paup,
Writer write 
)
static
void to_paup ( const FormattedFile in,
const char outf 
)