pvp.cxx File Reference

#include "pvp.h"
#include "AP_pos_var.h"
#include <TreeNode.h>
#include <arb_progress.h>

Include dependency graph for pvp.cxx:

Go to the source code of this file.

Functions
GB_ERROR	PVP_calculate (GBDATA *gb_main, const char *ali_name, const char *tree_name, const char *target_SAI_name)

Function Documentation

GB_ERROR PVP_calculate	(	GBDATA *	gb_main,
		const char *	ali_name,
		const char *	tree_name,
		const char *	target_SAI_name
	)

Definition at line 17 of file pvp.cxx.

References arb_assert, GB_transaction::close(), AP_pos_var::delete_aliEntry_from_SAI(), destroy(), error(), GB_AT_DNA, GB_AT_RNA, GB_AT_UNKNOWN, GB_await_error(), GBT_get_alignment_len(), GBT_get_alignment_type(), GBT_link_tree(), GBT_read_tree(), arb_progress::inc_and_check_user_abort(), NULp, AP_pos_var::retrieve(), AP_pos_var::save_aliEntry_to_SAI(), arb_progress::subtitle(), ta, tree, and WEIGHTED.

Referenced by AP_calc_pos_var_pars(), and calc_pvp().