- f -
- failed()
: FieldTransfer::TransportedData
, FormatReader
, MackeReader
, Reader
, RealignAttempt
, SimpleFormatReader
- failed_to_load()
: SearchedTree
- FailedAt()
: FailedAt
- failure()
: Realigner
- fake_agt()
: FINAL_TYPE< SEQTYPE >
- FamilyFinder()
: FamilyFinder
- FamilyList()
: FamilyList
- FamilyStat()
: FamilyStat
- fast()
: AW_device
- fast_align()
: FastSearchSequence
- fast_get()
: symmetric_matrix< T >
- fast_sync_changed_folding()
: AWT_graphic_tree
- FastAlignInsertion()
: FastAlignInsertion
- FastAlignReport()
: FastAlignReport
- FastSearchOccurrence()
: FastSearchOccurrence
- FastSearchSequence()
: FastSearchSequence
- feasible()
: ProbeIterator
- Feature()
: Feature
- FeatureLine()
: FeatureLine
- FieldReader()
: FieldReader
- FieldSelDef()
: FieldSelDef
- File_selection()
: File_selection
- FileContent()
: FileContent
- filename_changed()
: File_selection
- FileWatch()
: FileWatch
- FileWriter()
: FileWriter
- fill()
: ALI_selection
, AW_subset_selection
, AWT_configuration_selection
, AWT_tree_selection
, File_selection
, Itemfield_Selection
, PT_selection
, SAI_selection
- fill_entries_matching_values()
: AW_subset_selection
- fill_marked_bakts()
: MO_Liste
- fill_Stat_Arrays()
: Sondentopf
- filled()
: GBS_strstruct
- filled_box()
: AWT_graphic_tree
- FillStyle()
: AW::FillStyle
- filter_refs()
: RefEntries::RefSelector
- filter_string()
: AP_filter
- FilterDefinition()
: FilterDefinition
- FilteredExport()
: FilteredExport
- final_flush()
: Formatter
- finalizeOrganism()
: DBwriter
- find()
: ArbProbeCollection
, EdgeBetween
, FastSearchSequence
, InfoWindowRegistry
, RegFieldSelection
, SEC_root
, StringParser
, TextRef
- find_and_deliverTo()
: Clusterer
- find_best_matches_info()
: SpecSetRegistry
- find_best_matching_PART_in()
: RootSynchronizer
- find_best_matching_subtree()
: GroupBuilder
- find_best_root_candidate()
: RootSynchronizer
- find_clusters()
: FINAL_TYPE< SEQTYPE >
- find_data_color_idx()
: AW_common
- find_family()
: ALI_PT
- find_first_that()
: ED4_manager
- find_good_roots_for_trees()
: RootSynchronizer
- find_index_near_leftsum()
: PrefixProbabilities
- find_innermost_edge()
: TreeRoot
- find_innermost_part()
: DeconstructedTree
- find_maininfo_of_same_type_as()
: InfoWindowRegistry
- find_node_by_name()
: ST_ML
- find_parent_clade()
: TreeNode
- find_parent_with_groupInfo()
: TreeNode
- find_part()
: DeconstructedTree
- find_predefined()
: AWT_configuration
- find_qualified_token()
: Data
- find_reusable_of_same_type_as()
: InfoWindowRegistry
- find_token()
: Data
- find_worst_matching_PART_in()
: RootSynchronizer
- findBestClusterBasedOnWords()
: Clusterer
- findColumn()
: ProbeMatch_impl
- findLeafNamed()
: TreeNode
- findMatches()
: SearchTree
, SearchTreeNode
- findMaximumWeight()
: FINAL_TYPE< SEQTYPE >
- findResultSet()
: ArbMatchResultsManager
- findTag()
: Importer
- FindTypeOfRNA()
: Structure3D
- finish()
: FINAL_TYPE< SEQTYPE >
, SpecSetRegistry
, Writer
- finish_edit()
: ED4_Edit_String
- finished_in_time()
: LimitedTime
- finishSave()
: ArbDBWriter
- first()
: ALI_TLIST< T >
, TwoLeafs
- first_base()
: ALI_MAP
- first_base_abspos()
: BasePosition
- first_family_()
: ALI_PT
- first_header()
: HeaderList
- first_list()
: TokenListBlock
- first_non_key_character()
: keychar_table
- first_pair_position()
: BI_helix
- first_position()
: BI_helix
- first_range_gc()
: AW_gc_manager
- first_reference_base()
: ALI_MAP
- first_species()
: export_sequence_data
- first_token()
: TokenList
, TokenListBlock
- firstDifference()
: chartable::SepBaseFreq
- firstDotPosition()
: CompactedSubSequence
- firstListMember()
: FINAL_TYPE< SEQTYPE >
- firstWithLessIndentThan()
: FINAL_TYPE< SEQTYPE >
- fix_deleted_groups()
: ParentCache
- fix_dst()
: merge_scheme
- fix_src()
: merge_scheme
- fixAngleBugs()
: FINAL_TYPE< SEQTYPE >
- fixDeletedSon()
: TreeNode
- fixEmptyQualifiers()
: Feature
- fixInvalidHelixPositions()
: FINAL_TYPE< SEQTYPE >
- fixKeeledOrientation()
: TreeNode
- fixRadian()
: AW::Angle
- Flag()
: Flag
- FlagLayout()
: FlagLayout
- flags_clearable()
: AWT_graphic_exports
- flags_writeable()
: AWT_graphic_exports
- flip()
: FINAL_TYPE< SEQTYPE >
- flipxy()
: AW::Vector
- flush()
: ArbStringCache
, AW_device
, cache::Cache< SMARTPTR >
, FINAL_TYPE< SEQTYPE >
, Formatter
, LineQueue
, PS_FileBuffer
, SearchFIFO
- flush_cache()
: MarkerDisplay
- flush_loaded_tree()
: SearchedTree
- fold()
: ED4_group_manager
- fold_found_groups()
: GroupSearch
- fold_group()
: GroupSearch
- follow()
: AliChange
- follow_ali_change()
: LooseBases
- follow_ali_change_and_append()
: LooseBases
- forbid()
: TransTables
- forbidAll()
: TransTables
- forbidAllBut()
: TransTables
- force_expose()
: AW_window
- force_in_range()
: ConsensusBuildParams
- force_into_clipbox()
: AW_clipable
- force_update()
: arb_progress
, ArbProgress::counter
, ArbProgress::nestable
, null_counter
- forcesType()
: FieldTransfer::WriteRule
- forceTargetType()
: FieldTransfer::Rule
- forget()
: AP_tree_folding
, ColumnStat
, DI_GLOBAL_MATRIX
, SpeciesFlags
- forget_auto_unfolded()
: AWT_graphic_tree
- forget_cluster_id()
: FoundGroup
- forget_edges()
: ResourceStack
- forget_hierarchy_cbs()
: GB_MAIN_TYPE
- forget_if_not_has_type()
: DI_GLOBAL_MATRIX
- forget_lookup()
: GroupCluster
- forget_nodes()
: ResourceStack
- forget_origin()
: TreeNode
- forget_positions()
: AW_trackPositions_device
- forget_relatives()
: TreeNode
- forget_results()
: GroupSearch
- forget_sequence()
: AP_sequence
, MostLikelySeq
- forgetDatabase()
: BoundActionTracker
- forgetDoneChecks()
: CheckedConsistencies
- forgetDupCriteria()
: GroupSearch
- forgetLastImport()
: ImportTestData
- forgetQExpressions()
: GroupSearch
- forgetSortCriteria()
: GroupSearch
- format()
: ConvertibleData
, FINAL_TYPE< SEQTYPE >
, InputFormat
, OutputFormat
- format_indentations()
: FINAL_TYPE< SEQTYPE >
- format_lists()
: FINAL_TYPE< SEQTYPE >
- FormattedFile()
: FormattedFile
- Formatter()
: Formatter
- FormatTester()
: FormatTester
- forward()
: AW_selection_list_iterator
, ProbeOccurrence
, StrictlyAliased_BasePtrRef< DERIVED, BASE >
- forward_event()
: ED4_host
, ED4_plugin_host
- found()
: FastSearchOccurrence
- FoundGroup()
: FoundGroup
- free()
: AlignBuffer
, ArbRefCount
, ClustersData
- free_all_keys()
: GB_MAIN_TYPE
- free_area()
: ALI_SUB_SOLUTION
- free_args()
: NtreeCommandLine
- free_data()
: GBENTRY
- free_elem()
: CharPtrArray
- free_reference()
: Counted< T, AP >
- from()
: PosRange
- fromKey()
: ID_checker
- fromText()
: ID_checker
- fulfilled()
: arb_test::expectation
, arb_test::match_expectation
- fulfilled_by()
: acceptAnyTerminal
, acceptConsensusTerminal
, ED4_TerminalPredicate
, has_base_at
- fullname()
: FINAL_TYPE< SEQTYPE >
- FunInfo()
: FunInfo