- b -
- b()
: AW_rgb16
, AW_rgb_diff
, AW_rgb_normalized
- back()
: Reader
- backFeatureTableLine()
: Importer
- backLine()
: LineReader
- BackTraceInfo()
: BackTraceInfo
- BadPositionsOrder()
: BadPositionsOrder
- Bakt_Info()
: Bakt_Info
- base()
: ALI_NORM_SEQUENCE
, ALI_SEQUENCE
- base2sequence_position()
: ED4_cursor
- base_count()
: BasePosition
- base_weight()
: ALI_PROFILE
- baseAt()
: SEC_db_interface
- BaseCounter()
: BaseCounter
- BaseCounts()
: BaseCounts
- BaseFrequencies()
: BaseFrequencies
- BaseInverter()
: BaseInverter
- BasePosition()
: BasePosition
- bases_and_gaps_at()
: BaseFrequencies
- BasicStatus()
: BasicStatus
- before()
: timestamp
- beforeBase()
: Dots
- begin()
: GroupCluster
, OligoRegistry
, QueriedGroups
, RangeList
, SEC_drawn_positions
- begin_transaction()
: ALI_ARBDB
, GB_MAIN_TYPE
- beginDeconstructionPhase()
: RootSynchronizer
- BeginTexturizer()
: FINAL_TYPE< SEQTYPE >
- behind()
: LinePart
- belongs_to_range()
: gc_desc
- best_click()
: AWT_graphic_event
, FINAL_TYPE< SEQTYPE >
- BestEdge()
: BestEdge
- bestMatch()
: RSpecSet
- betterThan()
: GroupPenalty
- BI_ecoli_ref()
: BI_ecoli_ref
- BI_helix()
: BI_helix
- BI_pairdef()
: BI_pairdef
- big_enough()
: DupCriteria
- bigger_extent()
: AW::Rectangle
- bigger_table_entry_size_needed()
: chartable::SepBaseFreq
- bind_against()
: MatchingOligo
- bind_to_selected_item()
: InfoWindow
- bind_to_species()
: AP_sequence
, MostLikelySeq
- bind_tree_callback()
: BoundTreeAwarCallback
- binop_pair()
: binop_pair
- bit_is_set()
: PART
- bitcounter()
: bitcounter
- BitField()
: BitField
- bitstring_bytes()
: SpecSetRegistry
- bitstring_longs()
: SpecSetRegistry
- Bitvector()
: Bitvector
- Block()
: Block
- block_token()
: TokenListBlock
- blowup_string()
: AP_filter
- bonds()
: SEC_db_interface
- bootstrap2branchlen()
: TreeNode
- BootstrapConfig()
: BootstrapConfig
- bootstrapped_seqpos()
: AP_filter
- borders_sequence()
: ALI_PROFILE
- bottom()
: AW::Rectangle
, ED4_scrolled_rectangle
- BoundActionTracker()
: BoundActionTracker
- bounding_box()
: AW::Rectangle
- BoundTreeAwarCallback()
: BoundTreeAwarCallback
- BoundWindowCallback()
: BoundWindowCallback
- box()
: AW_device
- box_clip()
: AW_clipable
- branchlen2bootstrap()
: TreeNode
- BranchLinewidthScaler()
: BranchLinewidthScaler
- BranchMover()
: BranchMover
- BranchRotator()
: FINAL_TYPE< SEQTYPE >
- BranchScaler()
: BranchScaler
- BranchWindow()
: BranchWindow
- bubble_sort()
: KeySorter
- BufferedFileReader()
: BufferedFileReader
- BufferedPipeReader()
: BufferedPipeReader
- BufferPtr()
: BufferPtr< T >
- build_consensus_string()
: BaseFrequencies
, ED4_abstract_group_manager
- build_consensus_string_to()
: BaseFrequencies
- build_sel()
: FieldSelDef
- build_sorted_list()
: PartRegistry
- build_widget()
: awt_check_box
, awt_input_field
, awt_radio_button
, awt_string_handler
, awt_text_viewport
, awt_viewport
, FINAL_TYPE< SEQTYPE >
- buildColorString()
: ED4_SearchResults
- BuildDisplayList()
: Structure3D
- buildInferableClusterStartingWith()
: Clusterer
- buildIntergeneList()
: GenePositionMap
- buildLeafList()
: AP_tree
- buildParagraphTree()
: FINAL_TYPE< SEQTYPE >
- buildPrimerTrees()
: PrimerDesign
- buildQueryExpr()
: QUERY::DbQuery
- buildStructureString()
: SEC_root
- button()
: AWT_graphic_event
- button_height()
: AW_window
- button_length()
: AW_window