- m -
- Macke()
: FINAL_TYPE< SEQTYPE >
- MackeParser()
: MackeParser
- MackeReader()
: MackeReader
- MacroRecorder()
: MacroRecorder
- MacroTalkSleep()
: MacroTalkSleep
- main_loop()
: AW_root
- make()
: AliDataSlice
, arb_test::predicate_description
, AW_at_storage
, FINAL_TYPE< SEQTYPE >
, SaiAciApplicator
, SaiBoolchainOperator
, SaiBoolRule
, SaiOperator
, ValueTuple
- make_cb()
: StrictlyTypedCallback< RT, P1, P2, P3 >
- MAKE_CLONABLE()
: arb_test::expectation_group
, arb_test::FINAL_TYPE< T >
, arb_test::match_expectation
, arb_test::predicate_matcher< T, FUNC >
- make_empty()
: ali_aligner_dellist
, ALI_TLIST< T >
- make_filter()
: FilterDefinition
- make_global()
: AW_awar
- make_one_map()
: ALI_SUB_SOLUTION
- make_sensitive()
: AW_root
- make_unique_key()
: StrUniquifier
- make_valid()
: ConsensusBuildParams
- makeAciConverter()
: FieldTransfer::Rule
- makedists()
: di_protdist
- makeEdge()
: AP_main
, StackFrameData
- makeError()
: FieldTransfer::TransportedData
- makeFromConfig()
: FieldTransfer::Rule
- makeInverseOf()
: ST_base_vector
- makeNode()
: AP_main
, AP_tree_root
, CompressionRoot
, FINAL_TYPE< SEQTYPE >
, SimpleRoot
, SizeAwareRoot
, StackFrameData
, TreeRoot
- makeSimple()
: FieldTransfer::Rule
- makeWindowPopper()
: AW_window
- makeWindowReplacer()
: AW_window
- map()
: AW_awar
- Map()
: DbScanner
- map_gc()
: AW_common
, AW_common_Xm
, AW_GC_set
- map_item()
: InfoWindow
- map_key()
: ed_key
- map_mod_gc()
: AW_common
, AW_common_Xm
, AW_GC_set
- map_selected_item()
: InfoWindow
- map_species2tip()
: FINAL_TYPE< SEQTYPE >
- mapColors()
: ColorMap
- MapCurrentSpeciesToEcoliTemplate()
: Structure3D
- MapSaiToEcoliTemplate()
: Structure3D
- MapSearchStringsToEcoliTemplate()
: Structure3D
- mapsOrganism()
: InfoWindow
- mark()
: MarkedPrefixes
, MatrixDisplay
- mark_all_members()
: Cluster
- mark_angle_absolute()
: SEC_oriented
- mark_as_extern()
: GBENTRY
- mark_as_intern()
: GBENTRY
- mark_as_keeled()
: GroupPenalty
- mark_as_server()
: GB_MAIN_TYPE
- mark_compile_needed()
: ED4_remap
- mark_compile_needed_force()
: ED4_remap
- mark_deep_leafs()
: AP_tree
- mark_degenerated_branches()
: AP_tree
- mark_duplicates()
: AP_tree
- mark_element()
: ALI_TLIST< T >
- mark_for_removal()
: TypedDatabaseCallback
- mark_function_defined()
: Package
- mark_handcoded_functions()
: xsubGenerator
- mark_long_branches()
: AP_tree
- mark_matching()
: PT_Traversal
- mark_sequence_set()
: AP_sequence
- mark_species()
: GroupUIdata
- mark_species_in_rest_of_tree()
: AWT_graphic_tree
- mark_species_in_tree()
: AWT_graphic_tree
- mark_species_in_tree_that()
: AWT_graphic_tree
- mark_subtree()
: ARB_seqtree
- markAsLeaf()
: TreeNode
- markDeepLeafs()
: BranchWindow
- markDegeneratedBranches()
: BranchWindow
- marked()
: ALI_TLIST< T >
, AWT_graphic_tree_group_state
- marked_species_select()
: ED4_multi_species_manager
- MarkedPrefixes()
: MarkedPrefixes
- markerCount()
: NodeMarkers
- MarkerDisplay()
: MarkerDisplay
- MarkerIdentifier()
: MarkerIdentifier
- MarkerPosition()
: MarkerPosition
- MarkerXPos()
: MarkerXPos
- markLongBranches()
: BranchWindow
- markTarget()
: ScopedTransporter
- mask_global()
: awt_mask_item
, FINAL_TYPE< SEQTYPE >
- MasterCanvas()
: MasterCanvas
- match()
: RegExpr
- match_expectation()
: arb_test::match_expectation
- matchable_value()
: arb_test::FINAL_TYPE< T >
- matchedNode()
: RSpecSet
- matches()
: arb_test::FINAL_TYPE< T >
, arb_test::matcher
, arb_test::predicate< FUNC >
, arb_test::predicate_matcher< T, FUNC >
, arb_test::value_matcher< T >
, Command
, gb_hierarchy_location
, NamedCommand
, NoSuchCommand
, QueryExpr
, TokenMatcher
- matches4reuse()
: FieldSelDef
- matches_at()
: PrefixIterator
- matches_current_prefix()
: GroupBuilder
- matches_package_prefix()
: Package
- matches_variable_type()
: AW_scalar
- matchesKeyOf()
: TokenMatcher
- matchesValueOf()
: TokenMatcher
- matchGroups()
: GroupMatchScorer
- matching_variable_type()
: AW_scalar
- MatchingOligo()
: MatchingOligo
- matchPathOnOneFalseIDs()
: PS_Candidate
- MatchRequest()
: MatchRequest
- matchSequenceAgainstPrimerTrees()
: PrimerDesign
- matchWeight()
: ArbProbeMatchWeighting
- matchWeighting()
: ArbProbeCollection
- matchWeightResult()
: ArbProbeMatchWeighting
- MatrixDisplay()
: MatrixDisplay
- MatrixOrder()
: MatrixOrder
- max()
: Range
- max2width()
: ColumnWidths
- max_allowed_passes()
: Partition
- max_cluster_start_index()
: Clusterer
- max_columns()
: FINAL_TYPE< SEQTYPE >
, NodeTextBuilder
- max_frequency()
: ST_base_vector
- max_frequency_at()
: BaseFrequencies
- max_index()
: SEC_root
- max_length()
: PrefixIterator
- max_size()
: ALI_TSTACK< T >
- MaxAA()
: AWT_translator
- MaxBond()
: MaxBond
- maximumWeight()
: ArbMatchResultsManager
- maxSize()
: SEC_constrainted
- may_be_recollected()
: FINAL_TYPE< SEQTYPE >
- may_be_removed()
: gb_callback
- may_read()
: FieldReader
- may_refer_to_same_part_as()
: CompactedSubSequence
- maybe_end()
: Output
- maybe_start()
: Output
- maybe_write()
: Output
- mayBeUsedWith()
: Dict
- mayFailTranslation()
: Distributor
- mean_callback_time()
: AW_awar
- mean_min_max()
: ValueCounter< T >
- mean_min_max_percent()
: ValueCounter< T >
- mem_needed_for_dump()
: MemDump
- member()
: ED4_container
- members()
: ED4_container
- members_ok()
: ED4_container
- MemBlock()
: MemBlock
- MemBlockManager()
: MemBlockManager
- memcpy()
: arb_test::StaticCode
- MemDump()
: MemDump
- memorize()
: LooseBases
- memorize_insertion()
: FastAlignReport
- Memory()
: Memory
- memptr()
: ChainIteratorStage2
- memsize()
: AliData
, GBENTRY
- merge()
: Bitvector
, FINAL_TYPE< SEQTYPE >
- merge_scheme()
: merge_scheme
- mergeWith()
: FINAL_TYPE< SEQTYPE >
- message()
: AW_window
- Message()
: LineAttachedMessage
- MessageSpamFilter()
: MessageSpamFilter
- MetaInfo()
: MetaInfo
- MetaTagTranslator()
: MetaTagTranslator
- MG_remap()
: MG_remap
- MG_remaps()
: MG_remaps
- min()
: Range
- min_cluster_size()
: DupCriteria
- min_frequency()
: ST_base_vector
- minDistanceSum()
: RootSynchronizer
- minSize()
: SEC_constrainted
- mis_width()
: format_props
- Mismatches()
: Mismatches
- MismatchWeights()
: MismatchWeights
- mix()
: FINAL_TYPE< SEQTYPE >
, NoTuple
, ValueTuple
- mixTree()
: AP_tree_edge
- MO_Liste()
: MO_Liste
- modify()
: ConfigModifier
- modifyConfig()
: ConfigModifier
- ModRLimit()
: ModRLimit
- monitor_horizontal_scroll_cb()
: MatrixDisplay
, PH_display
- monitor_vertical_scroll_cb()
: MatrixDisplay
, PH_display
- moreThan_expectation()
: arb_test::FINAL_TYPE< T >
- MostLikelySeq()
: MostLikelySeq
- MostUsedPos()
: MostUsedPos
- move()
: AW::LineVector
, AW::Position
, CharPtrArray
- move_box()
: FlagLayout
- move_content_to()
: AW_selection_list
- move_cursor()
: ED4_cursor
- move_edges()
: ResourceStack
- move_group_to()
: AP_tree
- move_info_to()
: NodeState
- move_member()
: ED4_container
- move_nodes()
: ResourceStack
- move_region()
: AW_device
, FINAL_TYPE< SEQTYPE >
- move_requested_by_child()
: ED4_manager
- move_requested_by_parent()
: ED4_manager
- move_selection()
: AW_selection_list
- move_to()
: KeySorter
- move_x()
: PH_display_status
- moveNextTo()
: AP_tree
, FINAL_TYPE< SEQTYPE >
- moveTo()
: AW::LineVector
, AW::Position
, FINAL_TYPE< SEQTYPE >
- moveToEnd()
: CursorPos
- movex()
: AW::Position
- movey()
: AW::Position
- MP_Main()
: MP_Main
- MP_Window()
: MP_Window
- ms_since()
: ARB_timestamp
- MultiFastaWriter()
: MultiFastaWriter
- MultiFieldReader()
: MultiFieldReader
- MultiFileReader()
: FINAL_TYPE< SEQTYPE >
- multifurc_limits()
: TreeNode::multifurc_limits
- multifurcate()
: ARB_edge
, TreeNode
- multifurcate_whole_tree()
: TreeNode
- multiple_source_fields()
: FieldTransfer::ReadRule
- multiplyWith()
: ST_base_vector
- Multiroot()
: Multiroot
- mutable_instance()
: SpeciesFlags
- MutableBoundItemSel()
: MutableBoundItemSel
- mutate_Probe()
: probe_combi_statistic
- mutations_if_combined_with()
: AP_combinableSeq
, FINAL_TYPE< SEQTYPE >
- MutationsPerSite()
: MutationsPerSite
- Mutex()
: Mutex