- o -

• occurrence() : ProbeIterator
• occursInBothTrees() : SpeciesInTwoTrees
• of() : arb_test::FINAL_TYPE< T > , PrefixProbabilities
• of_range() : PrefixProbabilities
• offset() : AlignBuffer , BufferPtr< T > , FastAlignInsertion , FastSearchOccurrence , MarkerXPos , TripleOffset
• ofgroup() : arb_test::FINAL_TYPE< T >
• ok() : BaseFrequencies , CharPtrArray , FileWriter , GB_transaction , GcgCommentWriter , Reader , Writer
• ok_for_next_gen() : probe_combi_statistic
• old_value() : LocallyModify< T >
• older_than() : timestamp
• Oligo() : Oligo
• oligo_cmp_abs() : oligo_cmp_abs
• oligo_cmp_rel() : oligo_cmp_rel
• oligo_comparator() : oligo_comparator
• OligoRegistry() : OligoRegistry
• on_hide() : AW_window
• only_show_diff_for() : ED4_reference
• open() : ALI_ARBDB , AP_main , BasicStatus , FINAL_TYPE< SEQTYPE > , PH_root , XML_Comment , XML_Node , XML_Text
• open_db_for_merge() : SelectedDatabase
• open_dbs() : gb_local_data , merge_scheme
• open_global_shell() : GB_test_shell_closed
• Opened() : XML_Node
• OpenGLGraphics() : FINAL_TYPE< SEQTYPE >
• openResultsFile() : ArbMatchResultsManager
• openXML() : ArbProbeCollection
• operate() : case_op , ED4_block_operator , replace_op , revcomp_op , shift_op , unalign_op
• operate_on_mem() : AliData , AliDataSlice , FINAL_TYPE< SEQTYPE > , LazyAliData , SpecificAliData< T > , SpecificGap< T >
• operator B *() : ARB_type_traits::Host< B, D >
• operator bool() : ARB_ERROR , AW_selection_list_iterator , ChainIteratorStage1 , ChainIteratorStage2 , EdgeChain , FailedAt , LazyPersistantFlag , PersistantFlag , SEC_base_iterator , SEC_base_part_iterator , SEC_segment_iterator , SEC_strand_const_iterator , SEC_strand_iterator , Validity , var_ref
• operator char() : softbase
• operator char *() : GBENTRY_memory
• operator const char *() : arb_test::copy< const char * > , SizedCstr
• operator const string &() : Ostring
• operator const T &() : arb_test::copy< T >
• operator const T *() : BufferPtr< T >
• operator D *() : ARB_type_traits::Host< B, D >
• operator string &() : Ostring
• operator T() : ConsumeUDC< T, convert_possible > , Lazy< T, UNDEFINED > , LazyFloat< T >
• operator T *() : BufferPtr< T > , RefPtr< T >
• operator unsigned() : timestamp
• operator!() : SetOnce
• operator!=() : ARB_edge , AW_rgb16 , AW_scalar , ClickedElement , Group , Location , PosRange
• operator()() : arb_test::containing , arb_test::epsilon_similar , BadPositionsOrder , BoundWindowCallback , Callback_FFV< RT, F1, F2 > , Callback_FVF< RT, F1, F2 > , Callback_FVV< RT, FIXED > , Callback_VV< RT > , charpLess , cmp_candidates , cmp_Rectangles , ColorMap , compare_by_criteria , CompareAlpha , CompareByLength , equals< T > , has_been_deleted , has_id , HasLevelSmallerThan , hasSequence , hasType , isAbove< T > , isBelow< T > , IsCallback , IsSpecificCallback , IsSpecificHierarchyCallback , less_DistinctPosRange , lt_field , lt_probe , ltByArbName , ltByInternalName , ltNonOverlap , nameOrder , NoCaseCmp , NodeInsertOrder , Not , oligo_cmp_abs , oligo_cmp_rel , oligo_comparator , PO_Less , PT_dump_loc , PT_Traversal , ptnd_chain_count_mishits , SCP_Less , ShallBeDeleted , SortClusterIDsBy , startsWithBlanks , StrictlyTypedCallback< RT, P1, P2, P3 > , TypedDatabaseCallback , was_modified
• operator*() : EdgeChain , RefPtr< T > , SEC_base_iterator , SEC_base_part_iterator , SEC_segment_iterator , SEC_strand_const_iterator , SEC_strand_iterator , SmartPtr< T, C > , Vector3
• operator*=() : AW::Angle , AW::Vector , ST_base_vector
• operator+() : Vector3
• operator++() : arb_progress , AW_selection_list_iterator , BufferPtr< T > , ChainIteratorStage1 , ChainIteratorStage2 , EdgeChain , Location , PrefixIterator , Reader , SEC_base_iterator , SEC_base_part_iterator , SEC_segment_iterator , SEC_strand_const_iterator , SEC_strand_iterator , SequencePosition
• operator+=() : AW::Angle , AW::Position , AW::Vector , Codon_Group , Int< I > , SequencePosition , ValueCounter< T >
• operator-() : AW::Angle , AW::Vector , Vector3
• operator--() : BufferPtr< T > , SequencePosition
• operator-=() : AW::Angle , AW::Position , AW::Vector , SequencePosition
• operator->() : RefPtr< T > , SEC_base_iterator , SEC_base_part_iterator , SEC_segment_iterator , SEC_strand_const_iterator , SEC_strand_iterator , SmartPtr< T, C >
• operator/() : Vector3
• operator/=() : AW::Vector
• operator<() : Callback_FFV< RT, F1, F2 > , Callback_FVF< RT, F1, F2 > , Callback_FVV< RT, FIXED > , Callback_VV< RT > , CallbackData< P1, P2 > , Candidate , ConfigDefinition , GEN_gene , indexed_name , LeafRelation , SequencePosition , StrictlyTypedCallback< RT, P1, P2, P3 > , TwoLeafs
• operator=() : ARB_ERROR , arb_test::str , ArbMatchResult , ArbProbeCollection , ArbProbeMatchWeighting , AW::Angle , FINAL_TYPE< SEQTYPE > , gene_struct , Int< I > , Lazy< T, UNDEFINED > , LazyFloat< T > , LazyPersistantFlag , Location , PersistantFlag , SmartPtr< T, C > , SQ_GroupData , SQ_GroupData_Impl< I > , SQ_GroupData_RNA , Validity
• operator==() : ARB_edge , AW_clicked_box , AW_clicked_element , AW_clicked_line , AW_clicked_text , AW_GC_config , AW_rgb16 , AW_scalar , Callback_FFV< RT, F1, F2 > , Callback_FVF< RT, F1, F2 > , Callback_FVV< RT, FIXED > , Callback_VV< RT > , CallbackData< P1, P2 > , ClickedElement , ColorRGBf , FINAL_TYPE< SEQTYPE > , FoundGroup , gb_hierarchy_location , Group , Location , PosRange , StrictlyTypedCallback< RT, P1, P2, P3 >
• operator>() : FailedAt , SequencePosition
• operator[]() : BufferPtr< T > , CharPtrArray , chartable::SepBaseFreq , CompactedSequence , CompactedSubSequence , Distributor , QueriedGroups , ReadableDataLoc , Tab
• opposite_position() : BI_helix
• optimize() : ali_aligner_dellist , ALI_PATHMAP , DecisionTree
• optimize_space() : CharPtrArray
• optimize_tree() : ArbParsimony
• OptiPerfMeter() : OptiPerfMeter
• OrganismName() : GEN_root
• OrgInfo() : OrgInfo
• orientationChanged() : FINAL_TYPE< SEQTYPE > , SEC_base
• Ostring() : Ostring
• other() : ARB_edge
• otherLoop() : FINAL_TYPE< SEQTYPE >
• otherNode() : AP_tree_edge
• out() : FileWriter
• Out() : FINAL_TYPE< SEQTYPE >
• out() : GcgCommentWriter , Seq , Writer
• outf() : FileWriter , Writer
• OutgroupMatcher() : OutgroupMatcher
• Output() : Output
• output() : output
• outside_group() : probe_input_data
• outsideLoop() : FINAL_TYPE< SEQTYPE >
• overall_duration_ms() : SimpleTester
• overall_range_count() : ColumnQualityInfo
• overlap_is_folded() : FoundGroup
• overlaps_with() : AW::Rectangle , PART
• overlapsWith() : PositionPair
• overlay_color_groups() : ItemShader , ShaderPlugin
• overlay_marked() : ItemShader , ShaderPlugin
• OVERRIDE_SEQ_ACCESSORS() : FINAL_TYPE< SEQTYPE >
• overwrite_element() : ALI_TLIST< T >
• own_or_terminate() : Mutex
• owned() : Mutex
• owned_by() : ArbProgress::counter
• owner() : ED4_container
• owns() : ArbProgress::nestable