convert.cxx File Reference

#include "embl.h"
#include "genbank.h"
#include "macke.h"

Include dependency graph for convert.cxx:

Go to the source code of this file.

Classes
class	ConvertibleData

Functions
static void	write_to_embl (FileWriter &write, const ConvertibleData &data, const Seq &seq)
static void	write_to_genbank (FileWriter &write, const ConvertibleData &data, const Seq &seq)
static void	write_to_macke (FileWriter &write, const ConvertibleData &data, const Seq &seq, int phase, bool first)
static void	to_macke (const FormattedFile &in, const char *outf)
void	convert (const FormattedFile &in, const FormattedFile &out)

Function Documentation

static void write_to_embl ( FileWriter &  write, const ConvertibleData &  data, const Seq &  seq  )

static

Definition at line 100 of file convert.cxx.

References embl_out(), FileWriter::seq_done(), and ConvertibleData::to_embl().

Referenced by convert().

static void write_to_genbank ( FileWriter &  write, const ConvertibleData &  data, const Seq &  seq  )

static

Definition at line 105 of file convert.cxx.

References genbank_out(), FileWriter::seq_done(), and ConvertibleData::to_genbank().

Referenced by convert().

static void write_to_macke ( FileWriter &  write, const ConvertibleData &  data, const Seq &  seq, int  phase, bool  first  )

static

Definition at line 110 of file convert.cxx.

References ConvertibleData::format(), macke_seq_data_out(), macke_seq_display_out(), macke_seq_info_out(), FileWriter::seq_done(), and ConvertibleData::to_macke().

Referenced by to_macke().

static void to_macke ( const FormattedFile &  in, const char *  outf  )

static

Definition at line 127 of file convert.cxx.

References FormatReader::create(), FileWriter::expect_written(), macke_out_header(), FileWriter::out(), seq, and write_to_macke().

Referenced by convert().

void convert	(	const FormattedFile &	in,
		const FormattedFile &	out
	)

Definition at line 154 of file convert.cxx.

References FormatReader::create(), EMBL, FASTDNAML, GCG, GENBANK, MACKE, FormattedFile::name(), NEXUS, PHYLIP, PRINTABLE, seq, str_equal(), SWISSPROT, throw_conversion_not_supported(), throw_error(), to_gcg(), to_macke(), to_paup(), to_phylip(), to_printable(), FormattedFile::type(), write_to_embl(), and write_to_genbank().

Referenced by do_conversion().