#include <arb_backtrace.h>
#include <arb_strbuf.h>
#include <arb_defs.h>
#include <arb_str.h>
#include "gb_key.h"
#include "gb_aci.h"
#include <SigHandler.h>
#include <execinfo.h>
#include <cstdarg>
#include <cctype>
#include <cerrno>
#include <ctime>
#include <setjmp.h>
#include <valgrind.h>

Include dependency graph for adstring.cxx:

Classes
class	TextRef

class	TaggedContentParser

Functions
static char *	GBS_string_2_key_with_exclusions (const char str, const char additional)

char *	GBS_string_2_key (const char *str)

char *	GB_memdup (const char *source, size_t len)

__ATTR__USERESULT GB_ERROR	check_key (const char *key, int len)

GB_ERROR	GB_check_key (const char *key)

GB_ERROR	GB_check_hkey (const char *key)

char *	GBS_escape_string (const char str, const char chars_to_escape, char escape_char)

char *	GBS_unescape_string (const char str, const char escaped_chars, char escape_char)

char *	GBS_eval_env (GB_CSTR p)

long	GBS_gcgchecksum (const char *seq)

uint32_t	GB_checksum (const char seq, long length, int ignore_case, const char exclude)

uint32_t	GBS_checksum (const char seq, int ignore_case, const char exclude)

size_t	GBS_shorten_repeated_data (char *data)

static TextRef	textBetween (const TextRef &t1, const TextRef &t2)

static void	g_bs_add_value_tag_to_hash (GB_HASH hash, const char tag, char *value)

static void	g_bs_convert_string_to_tagged_hash_with_delete (GB_HASH hash, char s, char default_tag, const char del)

static GB_ERROR	g_bs_convert_string_to_tagged_hash_with_rewrite (GB_HASH hash, char s, char default_tag, const char rtag, const char *aci, GBL_call_env &env)

static void	g_bs_merge_tags (const char tag, long, void cd_sub_result)

static void	g_bs_read_tagged_hash (const char value, long subhash, void cd_g_bs_collect_tags_hash)

static void	g_bs_read_final_hash (const char tag, long value, void cd_merge_result)

static char *	g_bs_get_string_of_tag_hash (GB_HASH *tag_hash)

static long	g_bs_free_hash_of_hashes_elem (const char , long val, void )

static void	g_bs_free_hash_of_hashes (GB_HASH *hash)

char *	GBS_merge_tagged_strings (const char s1, const char tag1, const char replace1, const char s2, const char tag2, const char replace2)

char *	GBS_modify_tagged_string_with_ACI (const char s, const char dt, const char tag, const char aci, GBL_call_env &env)

char *	GB_read_as_tagged_string (GBDATA gbd, const char tagi)

void	GBS_fwrite_string (const char strngi, FILE out)

static char *	GBS_fread_string (FILE *in)

char *	GBS_fconvert_string (char *buffer)

char *	GBS_replace_tabs_by_spaces (const char *text)

char *	GBS_trim (const char *str)

static char *	dated_info (const char *info)

char *	GBS_log_action_to (const char comment, const char action, bool stamp)

const char *	GBS_funptr2readable (void *funptr, bool stripARBHOME)

Variables
static const char *	EMPTY_KEY_NOT_ALLOWED = "Empty key is not allowed"

uint32_t	crctab []

Function Documentation

static char* GBS_string_2_key_with_exclusions	(	const char *	str,
		const char *	additional
	)

static

Definition at line 31 of file adstring.cxx.

References ARB_strdup(), GB_KEY_LEN_MAX, and GB_KEY_LEN_MIN.

Referenced by GBS_string_2_key().

char* GBS_string_2_key ( const char * str )

char* GB_memdup	(	const char *	source,
		size_t	len
	)

Definition at line 56 of file adstring.cxx.

Referenced by gb_convert_compression(), GB_read_bits(), GB_read_bytes(), GB_read_floats(), GB_read_ints(), and GB_read_string().

__ATTR__USERESULT GB_ERROR check_key	(	const char *	key,
		int	len
	)

inline

Definition at line 64 of file adstring.cxx.

References EMPTY_KEY_NOT_ALLOWED, GB_KEY_LEN_MAX, GB_KEY_LEN_MIN, GBS_global_string(), and NULp.

Referenced by GB_check_hkey(), and GB_check_key().

GB_ERROR GB_check_key ( const char * key )

Definition at line 85 of file adstring.cxx.

References check_key().

Referenced by aw_question(), field_create_cb(), GB_create(), GB_create_container(), GBT_add_data(), GBT_check_alignment_name(), GBT_check_tree_name(), and gcman_specific_awarname().

GB_ERROR GB_check_hkey ( const char * key )

Definition at line 92 of file adstring.cxx.

References check_key(), EMPTY_KEY_NOT_ALLOWED, gb_assert, and NULp.

Referenced by add_field_cb(), AW_awar::AW_awar(), check_data_path(), FieldTransfer::WriteRule::check_hkey(), field_create_cb(), GBT_add_data(), gbt_scan_db_rek(), gcman_specific_awarname(), and prepare_and_get_selected_itemfield().

char* GBS_escape_string	(	const char *	str,
		const char *	chars_to_escape,
		char	escape_char
	)

escape characters in 'str'

uses a special escape-method, which eliminates all 'chars_to_escape' completely from str (this makes further processing of the string more easy)

Parameters

str	string to escape
escape_char	is the character used for escaping. For performance reasons it should be a character rarely used in 'str'.
chars_to_escape	may not contain 'A'-'Z' (these are used for escaping) and it may not be longer than 26 bytes

Returns: heap copy of escaped string

Inverse of GBS_unescape_string()

Definition at line 124 of file adstring.cxx.

References buffer, and gb_assert.

Referenced by colorDefChanged_callback(), insert_genes_of_organism(), and standard_list2file().

char* GBS_unescape_string	(	const char *	str,
		const char *	escaped_chars,
		char	escape_char
	)

inverse of GB_escape_string() - for params see there

Definition at line 175 of file adstring.cxx.

References buffer, and gb_assert.

Referenced by colorDefTabNameChanged_callback(), parse_names_into_gene_struct(), and standard_file2list().

char* GBS_eval_env ( GB_CSTR p )

Definition at line 212 of file adstring.cxx.

References ARB_strpartdup(), GBS_strstruct::cat(), error(), GB_export_error(), GB_getenv(), GBS_find_string(), GBS_global_string(), GBS_strstruct::ncat(), NULp, and GBS_strstruct::release_memfriendly().

Referenced by aw_modal_file_selection(), AWT_create_ascii_print_window(), create_print_awars(), GB_disable_path(), GB_getenvPATH(), GB_read_file(), GB_textprint(), and getenv_autodirectory().

long GBS_gcgchecksum ( const char * seq )

Definition at line 246 of file adstring.cxx.

Referenced by gbl_gcgchecksum().

uint32_t GB_checksum	(	const char *	seq,
		long	length,
		int	ignore_case,
		const char *	exclude
	)

Definition at line 319 of file adstring.cxx.

References crctab, length, and tab().

Referenced by AW_advice(), calcSequenceChecksum(), ChecksumCollector::checksum(), GBS_checksum(), and PT_prepare_species_sequence().

uint32_t GBS_checksum	(	const char *	seq,
		int	ignore_case,
		const char *	exclude
	)

Definition at line 352 of file adstring.cxx.

References GB_checksum().

Referenced by adaptCopiedAlignment(), awt_create_select_filter_win(), concatenateFieldsCreateNewSpecies(), export_to_DB(), gbl_checksum(), GBT_gen_accession_number(), gen_extract_gene_2_pseudoSpecies(), CommandOutput::has_checksum(), pd_get_the_gene_names(), pd_get_the_names(), ArbImporter::read_data(), trackAlignmentChanges(), and ED4_terminal::write_sequence().

size_t GBS_shorten_repeated_data ( char * data )

Definition at line 357 of file adstring.cxx.

References gb_assert, and orgLen.

Referenced by QUERY::DbQuery_update_list(), dump_internal(), QueryExpr::matches(), and SET_QUERIED().

static TextRef textBetween	(	const TextRef &	t1,
		const TextRef &	t2
	)

static

Definition at line 478 of file adstring.cxx.

References TextRef::get_data(), and TextRef::get_following().

Referenced by TextRef::partBefore().

static void g_bs_add_value_tag_to_hash	(	GB_HASH *	hash,
		const char *	tag,
		char *	value
	)

static

Definition at line 590 of file adstring.cxx.

References GB_IGNORE_CASE, GBS_create_hash(), GBS_read_hash(), and GBS_write_hash().

Referenced by g_bs_convert_string_to_tagged_hash_with_delete(), and g_bs_convert_string_to_tagged_hash_with_rewrite().

static void g_bs_convert_string_to_tagged_hash_with_delete	(	GB_HASH *	hash,
		char *	s,
		char *	default_tag,
		const char *	del
	)

static

Definition at line 607 of file adstring.cxx.

References ARB_stricmp(), TextRef::copy(), g_bs_add_value_tag_to_hash(), TaggedContentParser::get_content(), TaggedContentParser::get_tag(), TaggedContentParser::has_content(), TaggedContentParser::has_part(), TaggedContentParser::has_tag(), and TaggedContentParser::next().

Referenced by GBS_merge_tagged_strings().

static GB_ERROR g_bs_convert_string_to_tagged_hash_with_rewrite	(	GB_HASH *	hash,
		char *	s,
		char *	default_tag,
		const char *	rtag,
		const char *	aci,
		GBL_call_env &	env
	)