fconv.cxx File Reference

#include "defs.h"
#include "fun.h"
#include "global.h"
#include <static_assert.h>
#include <unistd.h>
#include <arb_diff.h>

Include dependency graph for fconv.cxx:

Go to the source code of this file.

Functions
static const char *	format2name (Format type)
void	throw_conversion_not_supported (Format inType, Format ouType)
void	throw_conversion_failure (Format inType, Format ouType)
void	throw_conversion_not_implemented (Format inType, Format ouType)
void	throw_unsupported_input_format (Format inType)
void	throw_incomplete_entry ()
void	log_processed (int seqCount)

Variables
static int	log_processed_counter = 0
static int	log_seq_counter = 0

Function Documentation

static const char* format2name ( Format  type )

static

Definition at line 10 of file fconv.cxx.

References ca_assert, EMBL, FASTDNAML, GCG, GENBANK, MACKE, NEXUS, NULp, PHYLIP, PRINTABLE, SWISSPROT, and UNKNOWN.

Referenced by throw_conversion_failure(), throw_conversion_not_implemented(), throw_conversion_not_supported(), and throw_unsupported_input_format().

void throw_conversion_not_supported	(	Format	inType,
		Format	ouType
	)

Definition at line 27 of file fconv.cxx.

References format2name(), and throw_errorf().

Referenced by convert(), to_gcg(), to_paup(), to_phylip(), and to_printable().

void throw_conversion_failure	(	Format	inType,
		Format	ouType
	)

Definition at line 31 of file fconv.cxx.

References format2name(), and throw_errorf().

Referenced by ConvertibleData::to_embl(), ConvertibleData::to_genbank(), and ConvertibleData::to_macke().

void throw_conversion_not_implemented	(	Format	inType,
		Format	ouType
	)

Definition at line 35 of file fconv.cxx.

References format2name(), and throw_errorf().

Referenced by ConvertibleData::to_embl(), ConvertibleData::to_genbank(), and ConvertibleData::to_macke().

void throw_unsupported_input_format

(

Format

inType

)

Definition at line 39 of file fconv.cxx.

References format2name(), and throw_errorf().

Referenced by FormatReader::create().

void throw_incomplete_entry

(

void

)

Definition at line 43 of file fconv.cxx.

References throw_error().

Referenced by Parser::parse_entry().

void log_processed

(

int

seqCount

)

Definition at line 50 of file fconv.cxx.

Referenced by FileWriter::~FileWriter().

Variable Documentation

int log_processed_counter = 0

static

Definition at line 47 of file fconv.cxx.

int log_seq_counter = 0

static

Definition at line 48 of file fconv.cxx.