#include "st_ml.hxx"#include "MostLikelySeq.hxx"#include <ColumnStat.hxx>#include <AP_filter.hxx>#include <AP_Tree.hxx>#include <arb_progress.h>#include <gui_aliview.hxx>#include <ad_cb.h>#include <cctype>#include <cmath>
Include dependency graph for ST_ml.cxx:
Go to the source code of this file.
Macros | |
| #define | GET_ML_VECTORS_BUG_WORKAROUND_INCREMENT (ST_MAX_SEQ_PART-1) |
Functions | |
| static void | st_sequence_callback (GBDATA *, MostLikelySeq *seq) |
| static void | st_sequence_del_callback (GBDATA *, MostLikelySeq *seq) |
| GB_ERROR | tree_size_ok (AP_tree_root *tree_root) |
Variables | |
| DNA_Table | dna_table |
Macro Definition Documentation
| #define GET_ML_VECTORS_BUG_WORKAROUND_INCREMENT (ST_MAX_SEQ_PART-1) |
Definition at line 677 of file ST_ml.cxx.
Referenced by ST_ML::get_color_string(), and ST_ML::update_ml_likelihood().
Function Documentation
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static |
Definition at line 177 of file ST_ml.cxx.
References MostLikelySeq::sequence_change().
Referenced by MostLikelySeq::bind_to_species(), and MostLikelySeq::unbind_from_species().
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static |
Definition at line 181 of file ST_ml.cxx.
References MostLikelySeq::unbind_from_species().
Referenced by MostLikelySeq::bind_to_species(), and MostLikelySeq::unbind_from_species().
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inline |
Definition at line 461 of file ST_ml.cxx.
References error(), GBS_global_string(), ARB_seqtree_root::get_tree_name(), TreeNode::is_leaf(), and NULp.
Referenced by ST_ML::calc_st_ml().
