arb_export_seq_filtered.cxx File Reference

#include <FilteredExport.h>
#include <arbdbt.h>
#include <arb_file.h>
#include <string>
#include <list>
#include <cstdlib>

Include dependency graph for arb_export_seq_filtered.cxx:

Go to the source code of this file.

Classes
class	CLI

Functions
static GB_ERROR	export_seq_data (const CLI &args)
int	main (int argc, char **argv)

Function Documentation

static GB_ERROR export_seq_data ( const CLI &  args )

static

Definition at line 201 of file arb_export_seq_filtered.cxx.

References CLI::add_filters_to(), arb_assert, FilteredExport::do_accept_missing_data(), error(), GB_await_error(), GB_clear_error(), GB_close(), GB_IO_error(), gb_main, GB_open(), GB_unlink_or_warn(), GBT_get_alignment(), GBT_get_alignment_len(), GBT_get_default_alignment(), CLI::get_aliname(), CLI::get_basechars(), CLI::get_database(), CLI::get_fasta(), CLI::get_head_aci(), CLI::get_min_bases_count(), CLI::get_seq_aci(), CLI::has_filters(), NULp, FilteredExport::set_header_ACI(), FilteredExport::set_required_baseCount(), FilteredExport::set_sequence_ACI(), CLI::shall_accept_missing_data(), ta, and FilteredExport::write_fasta().

Referenced by main().

int main	(	int	argc,
		char **	argv
	)

Definition at line 283 of file arb_export_seq_filtered.cxx.

References EXIT_FAILURE, EXIT_SUCCESS, export_seq_data(), CLI::get_error(), CLI::help_wanted(), NULp, and CLI::show_help_if_useful().