ARB
aw_awar_defs.hxx
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1 #ifndef AW_AWAR_DEFS_HXX
2 #define AW_AWAR_DEFS_HXX
3 
4 #define AWAR_DBBASE "tmp/nt/arbdb"
5 #define AWAR_DB_PATH AWAR_DBBASE "/file_name"
6 #define AWAR_DB_NAME AWAR_DB_PATH "_without_path" // awar is automatically updated when AWAR_DB_PATH changes
7 
8 #define AWAR_DEFAULT_ALIGNMENT "presets/use" // has to match ../ARBDB/arbdb.h@GB_DEFAULT_ALIGNMENT
9 
10 #define AWAR_TREE "focus/tree_name"
11 #define AWAR_TREE_REFRESH "tmp/focus/tree_refresh" // touch this awar to refresh the tree display
12 #define AWAR_TREE_RECOMPUTE "tmp/focus/tree_recompute" // touch this awar to recompute the tree (does refresh as well)
13 #define AWAR_CONFIGURATION "focus/configuration"
14 
15 #define AWAR_SECURITY_LEVEL "tmp/etc/security_level"
16 
17 #define AWAR_GDE_EXPORT_FILTER "tmp/gde/export_filter"
18 #define AWAR_GDE_FILTER "tmp/gde/filter"
19 
20 #define AWAR_DB_COMMENT "description"
21 
22 #define AWAR_PT_SERVER "nt/pt_server"
23 #define AWAR_TARGET_STRING "nt/target_string"
24 #define AWAR_PRIMER_TARGET_STRING "nt/primer_target_string"
25 #define AWAR_GENE_CONTENT "nt/gene_content"
26 #define AWAR_MAX_MISMATCHES "nt/max_mismatches"
27 #define AWAR_EXPERT "nt/expert"
28 
29 #define AWAR_SAI_COLOR_STR "tmp/sai_color_str" // to visualize SAIs in probe Match window
30 
31 // local awars for edit and edit4:
32 
33 #define AWAR_SPECIES_NAME_LOCAL "tmp/edit/species_name" // string: name of selected species
34 #define AWAR_CURSOR_POSITION_LOCAL "tmp/edit/cursor_position" // int: position in sequence [0..N-1]
35 #define AWAR_EDITOR_ALIGNMENT "tmp/edit/alignment" // string: alignment used by editor
36 
37 // global awars
38 
39 #define AWAR_CURSOR_POSITION "tmp/focus/cursor_position" // int: position in sequence range=[1;len]
40 #define AWAR_SET_CURSOR_POSITION "tmp/focus/set_cursor_position" // int: set position in sequence (remote control for ARB_EDIT4) range=[0;len-1]
41 
42 #define AWAR_SPECIES_NAME "tmp/focus/species_name" // string: name of selected species
43 #define AWAR_INFO_BUTTON_TEXT "tmp/focus/info_button_text" // string: to display selected species
44 #define AWAR_ORGANISM_NAME "tmp/focus/organism_name" // string: name of selected organism (differs from AWAR_SPECIES_NAME only for pseudo-gene-species)
45 /* - normally AWAR_ORGANISM_NAME contains the same value as AWAR_SPECIES_NAME
46  - if AWAR_SPECIES_NAME contains the name of a pseudo gene-species then AWAR_ORGANISM_NAME
47  contains the name of the species the pseudo gene-species originated from */
48 // #define AWAR_EXPERIMENT_NAME "tmp/focus/experiment_name" // string : name of selected experiment
49 #define AWAR_SAI_NAME "tmp/focus/sai_name" // string : name of selected SAI (e.g. in EDIT4 and 'Manage SAI')
50 #define AWAR_SAI_GLOBAL "tmp/focus/sai_global" // string : name of selected SAI in EDIT4/Visualize SAI Tool - used in RNA3D Tool
51 
52 #define AWAR_HELIX_NAME "tmp/focus/helix_name" // string: name of selected helix, for helix numbers append _NR, get default by GBT_get_default_helix
53 
54 #define AWAR_ERROR_MESSAGES "tmp/message/displayed" // error-messages: display awar
55 
56 #define AWAR_FOOTER "tmp/LeftFooter" // mode line (showing help for selected mode)
57 #define AWAR_FOOTER_MAX_LEN 100 // max allowed textlen for mode line
58 
59 #define AWAR_AWM_MASK "tmp/awm_mask"
60 
61 #else
62 #error aw_awar_defs.hxx included twice
63 #endif