di_foundclusters.hxx File Reference

#include <gui_aliview.hxx>
#include <smartptr.h>
#include <map>
#include <vector>
#include <algorithm>
#include <string>
#include <dbitem_set.h>

Include dependency graph for di_foundclusters.hxx:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
class	Cluster
class	ClustersData

Macros
#define	cl_assert(cond)   arb_assert(cond)

Typedefs
typedef int32_t	ID
typedef SmartPtr< Cluster >	ClusterPtr
typedef std::map< ID, ClusterPtr >	KnownClusters
typedef KnownClusters::const_iterator	KnownClustersIter
typedef std::vector< ID >	ClusterIDs
typedef ClusterIDs::const_iterator	ClusterIDsIter

Enumerations
enum	ClusterOrder {   UNSORTED = 0, SORT_BY_MEANDIST = 1, SORT_BY_MIN_BASES = 2, SORT_BY_CLUSTERSIZE = 3,   SORT_BY_TREEPOSITION = 4, SORT_BY_MIN_DIST = 5, SORT_BY_MAX_DIST = 6, SORT_REVERSE = 1<<3 }
enum	ClusterMarkMode { CMM_ALL_BUT_REP = 0, CMM_ALL = 1, CMM_ONLY_REP = 2 }
enum	ClusterSubset { STORED_CLUSTERS, SHOWN_CLUSTERS }

Functions
char *	originalGroupName (const char *groupname)

Macro Definition Documentation

#define cl_assert

(

cond

)

arb_assert(cond)

Definition at line 38 of file di_foundclusters.hxx.

Typedef Documentation

typedef int32_t ID

Definition at line 43 of file di_foundclusters.hxx.

typedef SmartPtr<Cluster> ClusterPtr

Definition at line 155 of file di_foundclusters.hxx.

typedef std::map<ID, ClusterPtr> KnownClusters

Definition at line 156 of file di_foundclusters.hxx.

typedef KnownClusters::const_iterator KnownClustersIter

Definition at line 157 of file di_foundclusters.hxx.

typedef std::vector<ID> ClusterIDs

Definition at line 158 of file di_foundclusters.hxx.

typedef ClusterIDs::const_iterator ClusterIDsIter

Definition at line 159 of file di_foundclusters.hxx.

Enumeration Type Documentation

enum ClusterOrder

Enumerator
UNSORTED
SORT_BY_MEANDIST
SORT_BY_MIN_BASES
SORT_BY_CLUSTERSIZE
SORT_BY_TREEPOSITION
SORT_BY_MIN_DIST
SORT_BY_MAX_DIST
SORT_REVERSE

Definition at line 50 of file di_foundclusters.hxx.

enum ClusterMarkMode

Enumerator
CMM_ALL_BUT_REP
CMM_ALL
CMM_ONLY_REP

Definition at line 64 of file di_foundclusters.hxx.

enum ClusterSubset

Enumerator
STORED_CLUSTERS
SHOWN_CLUSTERS

Definition at line 164 of file di_foundclusters.hxx.

Function Documentation

char* originalGroupName

(

const char *

groupname

)

Definition at line 467 of file DI_foundclusters.cxx.

References ARB_strpartdup(), NULp, and originalGroupName().

Referenced by GroupBuilder::generate_group_name(), get_upgroup(), originalGroupName(), and GroupBuilder::update_group().