ARB
SQ_ambiguities.h
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1 // ==================================================================== //
2 // //
3 // File : SQ_ambiguities.h //
4 // Purpose : Class used for evaluation of iupac ambiguities //
5 // //
6 // //
7 // Coded by Juergen Huber in July 2003 - February 2004 //
8 // Coded by Kai Bader (baderk@in.tum.de) in 2007 - 2008 //
9 // Copyright Department of Microbiology (Technical University Munich) //
10 // //
11 // Visit our web site at: http://www.arb-home.de/ //
12 // //
13 // ==================================================================== //
14 
15 #ifndef ARBDB_BASE_H
16 #include <arbdb_base.h>
17 #endif
18 
19 #define seq_assert(bed) arb_assert(bed)
20 
22  int number;
23  int percent;
24  int iupac_value;
25 
26 public:
28  number(0),
29  percent(0),
30  iupac_value(0)
31  {}
32 
33  void SQ_count_ambiguities(const char *iupac, int length, GBDATA * gb_quality);
34 
35  int SQ_get_nr_ambiguities() const { return number; }
36  int SQ_get_percent_ambiguities() const { return percent; }
37  int SQ_get_iupac_value() const { return iupac_value; }
38 };
39 
Definition: iupac.cxx:21
void SQ_count_ambiguities(const char *iupac, int length, GBDATA *gb_quality)
int SQ_get_iupac_value() const
int SQ_get_nr_ambiguities() const
int SQ_get_percent_ambiguities() const
size_t length