ARB
TreeWrite.h
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1 // ============================================================ //
2 // //
3 // File : TreeWrite.h //
4 // Purpose : //
5 // //
6 // Institute of Microbiology (Technical University Munich) //
7 // www.arb-home.de //
8 // //
9 // ============================================================ //
10 
11 #ifndef TREEWRITE_H
12 #define TREEWRITE_H
13 
14 #ifndef ARBDB_BASE_H
15 #include <arbdb_base.h>
16 #endif
17 #ifndef NDS_H
18 #include <nds.h>
19 #endif
20 
22 typedef const char *(*TREE_make_node_text) (GBDATA *gb_main, GBDATA * gbd, enum NDS_Type mode, TreeNode *species, const char *tree_name);
23 
25  TREE_make_node_text_init init; // e.g. make_node_text_init() from AWT
26  TREE_make_node_text gen; // e.g. make_node_text_nds() from AWT
27 
29  init(init_),
30  gen(gen_)
31  {}
32 };
33 
35  TREE_DISALLOW_QUOTES = 0, // don't use quotes
36  TREE_SINGLE_QUOTES = 1, // use single quotes
37  TREE_DOUBLE_QUOTES = 2, // use double quotes
38 
39  TREE_FORCE_QUOTES = 4, // force usage of quotes
40  TREE_FORCE_REPLACE = 8, // replace all problematic characters (default is to replace quotes in quoted labels)
41 };
42 
43 GB_ERROR TREE_write_Newick(GBDATA *gb_main, const char *tree_name, const TREE_node_text_gen *node_gen, bool save_branchlengths, bool save_bootstraps, bool save_groupnames, bool pretty, TREE_node_quoting quoteMode, const char *path);
44 GB_ERROR TREE_write_XML(GBDATA *gb_main, const char *db_name, const char *tree_name, const TREE_node_text_gen *node_gen, bool skip_folded, const char *path);
45 GB_ERROR TREE_export_tree(GBDATA *gb_main, FILE *out, TreeNode *tree, bool triple_root, bool export_branchlens, bool use_double_quotes);
46 
47 #else
48 #error TreeWrite.h included twice
49 #endif // TREEWRITE_H
const char * GB_ERROR
Definition: arb_core.h:25
GB_ERROR TREE_write_XML(GBDATA *gb_main, const char *db_name, const char *tree_name, const TREE_node_text_gen *node_gen, bool skip_folded, const char *path)
Definition: TreeWrite.cxx:259
TREE_node_quoting
Definition: TreeWrite.h:34
NDS_Type
Definition: nds.h:24
GB_ERROR TREE_write_Newick(GBDATA *gb_main, const char *tree_name, const TREE_node_text_gen *node_gen, bool save_branchlengths, bool save_bootstraps, bool save_groupnames, bool pretty, TREE_node_quoting quoteMode, const char *path)
Definition: TreeWrite.cxx:336
TREE_make_node_text gen
Definition: TreeWrite.h:26
void(* TREE_make_node_text_init)(GBDATA *gb_main)
Definition: TreeWrite.h:21
TREE_node_text_gen(TREE_make_node_text_init init_, TREE_make_node_text gen_)
Definition: TreeWrite.h:28
const char *(* TREE_make_node_text)(GBDATA *gb_main, GBDATA *gbd, enum NDS_Type mode, TreeNode *species, const char *tree_name)
Definition: TreeWrite.h:22
TREE_make_node_text_init init
Definition: TreeWrite.h:25
GBDATA * gb_main
Definition: adname.cxx:33
GB_ERROR TREE_export_tree(GBDATA *gb_main, FILE *out, TreeNode *tree, bool triple_root, bool export_branchlens, bool use_double_quotes)
Definition: TreeWrite.cxx:431