AWT_filter.cxx File Reference

#include "awt_filter.hxx"
#include "awt_sel_boxes.hxx"
#include "ga_local.h"
#include <aw_awars.hxx>
#include <aw_root.hxx>
#include <aw_select.hxx>
#include <AP_filter.hxx>
#include <arbdbt.h>
#include <arb_strbuf.h>
#include <ad_cb.h>
#include <arb_str.h>

Include dependency graph for AWT_filter.cxx:

Go to the source code of this file.

Functions
static void	awt_create_select_filter_window_aw_cb (UNFIXED, adfiltercbstruct *cbs)
	recalc filter More...
static void	awt_add_sequences_to_list (adfiltercbstruct *cbs, const char *use, GBDATA *gb_extended, const char *pre, char tpre)
static void	awt_create_select_filter_window_gb_cb (UNFIXED, adfiltercbstruct *cbs)
void	awt_create_filter_awars (AW_root *aw_root, AW_default aw_def, const char *awar_filtername, const char *awar_mapto_alignment)
adfiltercbstruct *	awt_create_select_filter (AW_root *aw_root, GBDATA *gb_main, const char *def_name)
void	awt_set_awar_to_valid_filter_good_for_tree_methods (GBDATA *gb_main, AW_root *awr, const char *awar_name)
static AW_window *	awt_create_2_filter_window (AW_root *aw_root, adfiltercbstruct *acbs)
char *	AWT_get_combined_filter_name (AW_root *aw_root, GB_CSTR prefix)
AW_window *	awt_create_select_filter_win (AW_root *aw_root, adfiltercbstruct *acbs)
AP_filter *	awt_get_filter (adfiltercbstruct *acbs)
GB_ERROR	awt_invalid_filter (AP_filter *filter)
void	awt_destroy_filter (AP_filter *filter)

Function Documentation

static void awt_create_select_filter_window_aw_cb ( UNFIXED  , adfiltercbstruct *  cbs  )

static

recalc filter

Definition at line 15 of file AWT_filter.cxx.

References AW_root::awar(), adfiltercbstruct::awr, buffer, GBS_strstruct::cat(), adfiltercbstruct::def_2filter, adfiltercbstruct::def_alignment, adfiltercbstruct::def_cancel, adfiltercbstruct::def_filter, adfiltercbstruct::def_len, adfiltercbstruct::def_max, adfiltercbstruct::def_min, adfiltercbstruct::def_name, adfiltercbstruct::def_source, adfiltercbstruct::def_subname, ga_assert, GB_brother(), GB_clear_error(), GB_FIND, GB_get_father(), adfiltercbstruct::gb_main, GB_pop_transaction(), GB_push_transaction(), GB_read_bits(), GB_read_string(), GB_read_type(), GB_search(), GB_STRING, GBT_find_SAI(), GBT_find_species(), GBT_get_alignment_len(), GBS_strstruct::get_data(), max, min, GBS_strstruct::npaste_at(), NULp, GBS_strstruct::put(), AW_awar::read_int(), AW_awar::read_string(), s, AW_awar::write_int(), and AW_awar::write_string().

Referenced by awt_create_select_filter(), awt_create_select_filter_win(), and awt_create_select_filter_window_gb_cb().

static void awt_add_sequences_to_list ( adfiltercbstruct *  cbs, const char *  use, GBDATA *  gb_extended, const char *  pre, char  tpre  )

static

Definition at line 130 of file AWT_filter.cxx.

References ARB_strdup(), adfiltercbstruct::filterlist, GB_BITS, GB_child(), GB_entry(), GB_nextChild(), GB_read_char_pntr(), GB_read_key_pntr(), GB_read_type(), GB_STRING, GBS_global_string(), GBS_global_string_copy(), GBT_get_name_or_description(), AW_selection_list::insert(), and type.

Referenced by awt_create_select_filter_window_gb_cb().

static void awt_create_select_filter_window_gb_cb ( UNFIXED  , adfiltercbstruct *  cbs  )

static

Definition at line 162 of file AWT_filter.cxx.

References AW_root::awar(), AWAR_SPECIES_NAME, adfiltercbstruct::awr, awt_add_sequences_to_list(), awt_create_select_filter_window_aw_cb(), AW_selection_list::clear(), adfiltercbstruct::def_alignment, adfiltercbstruct::filterlist, adfiltercbstruct::gb_main, GB_pop_transaction(), GB_push_transaction(), GBT_find_species(), GBT_first_SAI(), GBT_next_SAI(), GBT_readOrCreate_char_pntr(), AW_selection_list::insert_default(), NULp, AW_awar::read_string(), and AW_selection_list::update().

Referenced by awt_create_select_filter(), and awt_create_select_filter_win().

void awt_create_filter_awars	(	AW_root *	aw_root,
		AW_default	aw_def,
		const char *	awar_filtername,
		const char *	awar_mapto_alignment
	)

creates awars needed for filter definition (see awt_create_select_filter())

created awars: "SOMETHING/name" (as specified in param awar_filtername; type STRING) "SOMETHING/filter" (type STRING) "SOMETHING/alignment" (type STRING)

The names of the created awars are available via adfiltercbstruct (after awt_create_select_filter() was called).

Parameters

aw_root	application root
aw_def	database for created awars
awar_filtername	name of filtername awar (has to be "SOMETHING/name"; awarname should start with "tmp/", saving in properties/db does not work correctly!).
awar_mapto_alignment	if given, "SOMETHING/alignment" is mapped to this awar

Definition at line 194 of file AWT_filter.cxx.

References ARB_strBeginsWith(), AW_root::awar_string(), ga_assert, GBS_string_eval(), and AW_awar::map().

Referenced by create_export_awars(), GDE_init(), NT_create_colstat_2_gnuplot_window(), pars_create_all_awars(), and SQ_create_awars().

adfiltercbstruct* awt_create_select_filter	(	AW_root *	aw_root,
		GBDATA *	gb_main,
		const char *	def_name
	)

Create filter definition (allowing customization and programmatical use of a filter)

Parameters

aw_root	application root
gb_main	DB root node
def_name	filtername awarname (name has to be "SOMETHING/name"; create using awt_create_filter_awars())

Returns

the filter definition

See also

awt_create_select_filter_win(), awt_get_filter()

Definition at line 225 of file AWT_filter.cxx.

References AW_awar::add_callback(), adfiltercbstruct::aw_filt, AW_ROOT_DEFAULT, AW_root::awar(), AW_root::awar_int(), AWAR_SPECIES_NAME, AW_root::awar_string(), adfiltercbstruct::awr, awt_create_select_filter_window_aw_cb(), awt_create_select_filter_window_gb_cb(), adfiltercbstruct::def_2alignment, adfiltercbstruct::def_2filter, adfiltercbstruct::def_2name, adfiltercbstruct::def_alignment, adfiltercbstruct::def_cancel, adfiltercbstruct::def_dest, adfiltercbstruct::def_filter, adfiltercbstruct::def_len, adfiltercbstruct::def_max, adfiltercbstruct::def_min, adfiltercbstruct::def_name, adfiltercbstruct::def_simplify, adfiltercbstruct::def_source, adfiltercbstruct::def_subname, adfiltercbstruct::filterlist, ga_assert, GB_add_callback(), GB_CB_CHANGED, adfiltercbstruct::gb_main, gb_main, GB_pop_transaction(), GB_push_transaction(), GB_search(), GB_STRING, GBS_global_string(), GBS_string_eval(), GBT_get_SAI_data(), NULp, AW_awar::read_string(), AW_awar::touch(), and AW_awar::write_string().

Referenced by awt_create_2_filter_window(), create_AWTC_export_window(), GDE_menuitem_cb(), NT_create_colstat_2_gnuplot_window(), SQ_create_seq_quality_window(), and WeightedFilter::WeightedFilter().

void awt_set_awar_to_valid_filter_good_for_tree_methods	(	GBDATA *	gb_main,
		AW_root *	awr,
		const char *	awar_name
	)

Definition at line 314 of file AWT_filter.cxx.

References AW_root::awar(), GBT_find_SAI(), and AW_awar::write_string().

Referenced by pars_create_all_awars().

static AW_window* awt_create_2_filter_window ( AW_root *  aw_root, adfiltercbstruct *  acbs  )

static

Definition at line 326 of file AWT_filter.cxx.

References AW_root::awar(), awt_create_select_filter(), awt_create_select_filter_win(), adfiltercbstruct::def_2alignment, adfiltercbstruct::def_2name, adfiltercbstruct::def_alignment, adfiltercbstruct::gb_main, GB_pop_transaction(), GB_push_transaction(), and AW_awar::map().

Referenced by awt_create_select_filter_win().

char* AWT_get_combined_filter_name	(	AW_root *	aw_root,
		GB_CSTR	prefix
	)

Definition at line 334 of file AWT_filter.cxx.

References AW_root::awar(), AWAR_GDE_FILTER, AW_root::awar_no_error(), GBS_global_string(), GBS_global_string_copy(), and AW_awar::read_string().

Referenced by di_calculate_tree_cb(), and GDE_startaction_cb().

AW_window* awt_create_select_filter_win	(	AW_root *	aw_root,
		adfiltercbstruct *	acbs
	)

Create a filter selection window

Definition at line 365 of file AWT_filter.cxx.

References AW_window::at(), adfiltercbstruct::aw_filt, AW_POPDOWN(), AWM_ALL, AWM_EXP, awt_create_2_filter_window(), awt_create_select_filter_window_aw_cb(), awt_create_select_filter_window_gb_cb(), adfiltercbstruct::def_2name, adfiltercbstruct::def_cancel, adfiltercbstruct::def_len, adfiltercbstruct::def_max, adfiltercbstruct::def_min, adfiltercbstruct::def_name, adfiltercbstruct::def_simplify, adfiltercbstruct::def_source, adfiltercbstruct::def_subname, adfiltercbstruct::filterlist, adfiltercbstruct::gb_main, GB_pop_transaction(), GB_push_transaction(), GBS_checksum(), GBS_global_string_copy(), makeHelpCallback(), and NULp.

Referenced by awt_create_2_filter_window(), create_AWTC_export_window(), create_pars_init_window(), DI_create_matrix_window(), GDE_menuitem_cb(), NT_create_colstat_2_gnuplot_window(), SQ_create_seq_quality_window(), and STAT_create_chimera_check_window().

AP_filter* awt_get_filter

(

adfiltercbstruct *

acbs

)

create a filter from settings made in filter-definition window. always returns a filter, use awt_invalid_filter() to check for validity

Definition at line 431 of file AWT_filter.cxx.

References AW_root::awar(), adfiltercbstruct::awr, adfiltercbstruct::def_alignment, adfiltercbstruct::def_filter, adfiltercbstruct::def_simplify, AP_filter::enable_simplify(), GB_clear_error(), adfiltercbstruct::gb_main, GB_pop_transaction(), GB_push_transaction(), GBT_get_alignment_len(), NULp, AW_awar::read_int(), and AW_awar::read_string().

Referenced by WeightedFilter::create_filter(), export_go_cb(), GDE_startaction_cb(), sq_calc_seq_quality_cb(), and update_exportTest_result_cb().

GB_ERROR awt_invalid_filter

(

AP_filter *

filter

)

Definition at line 467 of file AWT_filter.cxx.

References AP_filter::is_invalid().

Referenced by GDE_startaction_cb(), and sq_calc_seq_quality_cb().

void awt_destroy_filter

(

AP_filter *

filter

)

Definition at line 471 of file AWT_filter.cxx.

Referenced by sq_calc_seq_quality_cb().