#include "st_window.hxx"
Include dependency graph for st_quality.hxx:
This graph shows which files directly or indirectly include this file:
Go to the source code of this file.
Classes | |
| class | Sampler |
| class | VarianceSampler |
| class | LikelihoodRanges |
| struct | ColumnQualityInfo |
Macros | |
| #define | st_assert(cond) arb_assert(cond) |
Functions | |
| GB_ERROR | st_ml_check_sequence_quality (GBDATA *gb_main, const char *tree_name, const char *alignment_name, ColumnStat *colstat, const WeightedFilter *weighted_filter, int bucket_size, int marked_only, st_report_enum report, const char *dest_field) |
Macro Definition Documentation
| #define st_assert | ( | cond | ) | arb_assert(cond) |
Definition at line 18 of file st_quality.hxx.
Referenced by LikelihoodRanges::add(), and LikelihoodRanges::add_relative().
Function Documentation
| GB_ERROR st_ml_check_sequence_quality | ( | GBDATA * | gb_main, |
| const char * | tree_name, | ||
| const char * | alignment_name, | ||
| ColumnStat * | colstat, | ||
| const WeightedFilter * | weighted_filter, | ||
| int | bucket_size, | ||
| int | marked_only, | ||
| st_report_enum | report, | ||
| const char * | dest_field | ||
| ) |
Definition at line 237 of file ST_quality.cxx.
References ST_ML::calc_st_ml(), destroy_ColumnQualityInfo(), error(), GB_IGNORE_CASE, GBS_create_dynaval_hash(), GBS_free_hash(), GBT_get_names_of_species_in_tree(), GBT_get_species_count(), ST_ML::get_filter(), ST_ML::get_filtered_length(), ST_ML::get_gbt_tree(), arb_progress::inc_and_check_user_abort(), NULp, ST_MAX_SEQ_PART, st_ml, st_ml_add_quality_string_to_species(), and st_ml_add_sequence_part_to_stat().
Referenced by st_check_cb().
