st_window.hxx File Reference

#include <aw_window.hxx>

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Typedefs
typedef unsigned char	ST_ML_Color

Enumerations
enum	st_report_enum { ST_QUALITY_REPORT_NONE, ST_QUALITY_REPORT_TEMP, ST_QUALITY_REPORT_YES }

Functions
void	STAT_set_postcalc_callback (ST_ML *st_ml, WindowCallbackSimple postcalc_cb, AW_window *cb_win)
AW_window *	STAT_create_main_window (AW_root *aw_root, ST_ML *st_ml)
ST_ML *	STAT_create_ST_ML (GBDATA *gb_main)
void	STAT_destroy_ST_ML (ST_ML *&st_ml)
AP_tree *	STAT_find_node_by_name (ST_ML *st_ml, const char *species_name)
ST_ML_Color *	STAT_get_color_string (ST_ML *st_ml, char *species_name, AP_tree *node, int start_ali_pos, int end_ali_pos)
bool	STAT_update_ml_likelihood (ST_ML *st_ml, char *result[4], int &latest_update, const char *species_name, AP_tree *node)
AW_window *	STAT_create_chimera_check_window (AW_root *aw_root, GBDATA *gb_main)

Typedef Documentation

typedef unsigned char ST_ML_Color

Definition at line 27 of file st_window.hxx.

Enumeration Type Documentation

enum st_report_enum

Enumerator
ST_QUALITY_REPORT_NONE
ST_QUALITY_REPORT_TEMP
ST_QUALITY_REPORT_YES

Definition at line 28 of file st_window.hxx.

Function Documentation

void STAT_set_postcalc_callback	(	ST_ML *	st_ml,
		WindowCallbackSimple	postcalc_cb,
		AW_window *	cb_win
	)

Definition at line 66 of file ST_window.cxx.

References ST_ML::set_postcalc_callback().

Referenced by configureColumnStat().

AW_window* STAT_create_main_window	(	AW_root *	aw_root,
		ST_ML *	st_ml
	)

Definition at line 70 of file ST_window.cxx.

References AW_POPDOWN(), AWAR_DEFAULT_ALIGNMENT, AW_root::awar_int(), AW_root::awar_string(), AWAR_TREE, COLSTAT_create_selection_window(), ST_ML::create_column_statistic(), ST_ML::get_column_statistic(), ST_ML::get_gb_main(), AW_window::load_xfig(), makeHelpCallback(), ST_ML_AWAR_COLSTAT_NAME, ST_ML_AWAR_CQ_MARKED_ONLY, and st_ok_cb().

Referenced by configureColumnStat().

ST_ML* STAT_create_ST_ML

(

GBDATA *

gb_main

)

Definition at line 110 of file ST_window.cxx.

Referenced by ARB_main().

void STAT_destroy_ST_ML

(

ST_ML *&

st_ml

)

Definition at line 113 of file ST_window.cxx.

References NULp, and st_ml.

Referenced by ED4_root::~ED4_root().

AP_tree* STAT_find_node_by_name	(	ST_ML *	st_ml,
		const char *	species_name
	)

Definition at line 127 of file ST_window.cxx.

References ST_ML::find_node_by_name().

Referenced by ED4_toggle_detailed_column_stats(), and st_ml_add_sequence_part_to_stat().

ST_ML_Color* STAT_get_color_string	(	ST_ML *	st_ml,
		char *	species_name,
		AP_tree *	node,
		int	start_ali_pos,
		int	end_ali_pos
	)

Definition at line 118 of file ST_window.cxx.

References ST_ML::get_color_string().

bool STAT_update_ml_likelihood	(	ST_ML *	st_ml,
		char *	result[4],
		int &	latest_update,
		const char *	species_name,
		AP_tree *	node
	)

See also

ST_ML::update_ml_likelihood()

Definition at line 122 of file ST_window.cxx.

References ST_ML::update_ml_likelihood().

AW_window* STAT_create_chimera_check_window	(	AW_root *	aw_root,
		GBDATA *	gb_main
	)

Definition at line 270 of file ST_window.cxx.

References AW_POPDOWN(), AW_ROOT_DEFAULT, AWAR_DEFAULT_ALIGNMENT, AW_root::awar_string(), awt_create_select_filter_win(), AWT_insert_config_manager(), st_check_cb_data::colstat, COLSTAT_create_selection_window(), create_itemfield_selection_button(), FIELD_FILTER_STRING_WRITEABLE, st_check_cb_data::filter, WeightedFilter::get_adfiltercbstruct(), makeHelpCallback(), NULp, SF_ALLOW_NEW, SPECIES_get_selector(), st_check_cb(), ST_ML_AWAR_COLSTAT_NAME, ST_ML_AWAR_CQ_BUCKET_SIZE, ST_ML_AWAR_CQ_DEST_FIELD, ST_ML_AWAR_CQ_KEEP_REPORTS, ST_ML_AWAR_CQ_MARKED_ONLY, ST_ML_AWAR_CQ_REPORT, ST_ML_AWAR_FILTER_NAME, st_remove_entries_cb(), and STAT_create_awars().

Referenced by popup_new_main_window().