#include <arbdb_base.h>#include <algorithm>#include <attributes.h>#include <arbtools.h>#include <cb.h>
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Classes | |
| struct | ST_base_vector |
| class | ST_rate_matrix |
| class | ST_ML |
Macros | |
| #define | st_assert(cond) arb_assert(cond) |
Typedefs | |
| typedef unsigned char | ST_ML_Color |
| typedef float | ST_FLOAT |
Enumerations | |
| enum | DNA_Base { ST_A, ST_C, ST_G, ST_T, ST_GAP, ST_MAX_BASE, ST_UNKNOWN = -1 } |
Macro Definition Documentation
| #define st_assert | ( | cond | ) | arb_assert(cond) |
Definition at line 30 of file st_ml.hxx.
Referenced by MostLikelySeq::bind_to_species(), ST_ML::calc_st_ml(), MostLikelySeq::calculate_ancestor(), ST_ML::get_ml_vectors(), MostLikelySeq::set_sequence(), and ST_ML::update_ml_likelihood().
Typedef Documentation
| typedef unsigned char ST_ML_Color |
