add_delete_callback(const ED4_managerCallback &cb) | ED4_manager | inline |
adjust_clipping_rectangle() | ED4_base | |
append_member(ED4_base *new_member) | ED4_container | |
build_consensus_string(PosRange range) const | ED4_abstract_group_manager | inline |
build_consensus_string(int *cons_length=NULp) const | ED4_abstract_group_manager | inline |
calc_bounding_box() FINAL_OVERRIDE | ED4_manager | virtual |
calc_group_depth() | ED4_base | |
calc_rel_coords(AW_pos *x, AW_pos *y) | ED4_base | |
calc_world_coords(AW_pos *x, AW_pos *y) const | ED4_base | inline |
calc_world_coords() const | ED4_base | inline |
changed_by_database() OVERRIDE | ED4_manager | virtual |
check_all() | ED4_base | |
check_in_bases(ED4_base *added_base) | ED4_manager | |
check_out_bases(ED4_base *subbed_base) | ED4_manager | |
clear() | ED4_container | |
clear_background(int color=0) | ED4_base | |
clear_refresh() | ED4_manager | |
clr_property(ED4_properties prop) | ED4_base | inline |
containing_species_manager() const | ED4_base | inline |
create_consensus(ED4_abstract_group_manager *upper_group_manager, arb_progress *progress) | ED4_manager | |
DECLARE_DUMP_FOR_BASECLASS(ED4_abstract_group_manager, ED4_manager) | ED4_abstract_group_manager | |
ED4_manager::DECLARE_DUMP_FOR_BASECLASS(ED4_manager, ED4_base) | ED4_manager | |
DECLARE_DUMP_FOR_LEAFCLASS(ED4_abstract_group_manager) | ED4_group_manager | |
DECLARE_DUMP_FOR_ROOTCLASS(ED4_base) | ED4_base | |
Delete() FINAL_OVERRIDE | ED4_manager | virtual |
delete_requested_by_child() | ED4_manager | |
delete_requested_children() OVERRIDE | ED4_manager | virtual |
deleted_from_database() OVERRIDE | ED4_manager | virtual |
distribute_children() | ED4_manager | |
draw_bb(int color) | ED4_base | |
dynamic_prop | ED4_base | |
E4B_AVOID_UNNEEDED_CASTS(group_manager) | ED4_group_manager | |
ED4_manager::E4B_AVOID_UNNEEDED_CASTS(manager) | ED4_manager | |
E4B_DECL_CASTOP(area_manager) | ED4_base | |
E4B_DECL_CASTOP(abstract_group_manager) | ED4_base | |
E4B_DECL_CASTOP(bracket_terminal) | ED4_base | |
E4B_DECL_CASTOP(columnStat_terminal) | ED4_base | |
E4B_DECL_CASTOP(consensus_sequence_terminal) | ED4_base | |
E4B_DECL_CASTOP(device_manager) | ED4_base | |
E4B_DECL_CASTOP(group_manager) | ED4_base | |
E4B_DECL_CASTOP(line_terminal) | ED4_base | |
E4B_DECL_CASTOP(manager) | ED4_base | |
E4B_DECL_CASTOP(multi_name_manager) | ED4_base | |
E4B_DECL_CASTOP(multi_sequence_manager) | ED4_base | |
E4B_DECL_CASTOP(multi_species_manager) | ED4_base | |
E4B_DECL_CASTOP(name_manager) | ED4_base | |
E4B_DECL_CASTOP(orf_terminal) | ED4_base | |
E4B_DECL_CASTOP(pure_text_terminal) | ED4_base | |
E4B_DECL_CASTOP(root_group_manager) | ED4_base | |
E4B_DECL_CASTOP(sequence_info_terminal) | ED4_base | |
E4B_DECL_CASTOP(sequence_manager) | ED4_base | |
E4B_DECL_CASTOP(sequence_terminal) | ED4_base | |
E4B_DECL_CASTOP(spacer_terminal) | ED4_base | |
E4B_DECL_CASTOP(species_manager) | ED4_base | |
E4B_DECL_CASTOP(species_name_terminal) | ED4_base | |
E4B_DECL_CASTOP(terminal) | ED4_base | |
E4B_DECL_CASTOP(text_terminal) | ED4_base | |
E4B_DECL_CASTOP(flag_header_terminal) | ED4_base | |
E4B_DECL_CASTOP(flag_terminal) | ED4_base | |
ED4_abstract_group_manager(const ED4_objspec &spec_, const char *id, AW_pos width, AW_pos height, ED4_manager *parent) | ED4_abstract_group_manager | |
ED4_base(const ED4_objspec &spec_, GB_CSTR id, AW_pos width, AW_pos height, ED4_manager *parent) | ED4_base | |
ED4_container() | ED4_container | |
ED4_group_manager(const char *id, AW_pos width, AW_pos height, ED4_manager *parent) | ED4_group_manager | |
ED4_manager(const ED4_objspec &spec_, const char *id, AW_pos width, AW_pos height, ED4_manager *parent) | ED4_manager | |
empty() const | ED4_container | inline |
event_sent_by_parent(AW_event *event, AW_window *aww) FINAL_OVERRIDE | ED4_manager | virtual |
existing_index(ED4_index idx) const | ED4_container | inlineprotected |
extension | ED4_base | |
find_first_that(ED4_level level, const ED4_basePredicate &fulfills_predicate) | ED4_manager | |
flag | ED4_base | |
fold() | ED4_group_manager | |
generate_configuration_string(GBS_strstruct &buffer) | ED4_base | |
get_area_level(ED4_multi_species_manager **multi_species_manager=NULp) const | ED4_base | |
get_competent_child(AW_pos x, AW_pos y, ED4_properties relevant_prop) | ED4_manager | |
get_competent_clicked_child(AW_pos x, AW_pos y, ED4_properties relevant_prop) | ED4_manager | |
get_consensus_relevant_terminal() const | ED4_base | |
get_defined_level(ED4_level lev) const | ED4_manager | |
get_first_terminal(int start_index=0) const | ED4_manager | |
get_last_terminal(int start_index=-1) const | ED4_manager | |
get_multi_species_manager() const | ED4_abstract_group_manager | inline |
get_name_of_species() | ED4_base | |
get_next_terminal() | ED4_base | |
get_parent(ED4_level lev) const | ED4_base | inline |
get_prev_terminal() | ED4_base | |
get_species_pointer() const | ED4_base | inline |
get_species_type() const | ED4_base | inline |
get_win_area(ED4_window *ed4w) const | ED4_base | inline |
handle_move(ED4_move_info *moveinfo) | ED4_manager | |
has_callback() const | ED4_base | inline |
has_parent(ED4_manager *Parent) | ED4_base | |
has_property(ED4_properties prop) const | ED4_base | inline |
height_link | ED4_base | |
hidden | ED4_base | |
hide_children() | ED4_manager | |
id | ED4_base | |
in_border(AW_pos abs_x, AW_pos abs_y, ED4_movemode mode) | ED4_base | |
index | ED4_base | |
insert_member(ED4_base *new_member) | ED4_container | |
inside_consensus_manager() const | ED4_base | inline |
inside_SAI_manager() const | ED4_base | inline |
inside_species_seq_manager() const | ED4_base | inline |
is_abstract_group_manager() const | ED4_base | inline |
is_area_manager() const | ED4_base | inline |
is_bracket_terminal() const | ED4_base | inline |
is_child_of(ED4_manager *Parent) | ED4_base | inline |
is_columnStat_terminal() const | ED4_base | inline |
is_consensus_manager() const | ED4_base | inline |
is_consensus_sequence_terminal() const | ED4_base | inline |
is_consensus_terminal() const | ED4_base | inline |
is_device_manager() const | ED4_base | inline |
is_flag_header_terminal() const | ED4_base | inline |
is_flag_terminal() const | ED4_base | inline |
is_group_manager() const | ED4_base | inline |
is_hidden() const FINAL_OVERRIDE | ED4_manager | inlinevirtual |
is_in_folded_group() const | ED4_base | |
is_line_terminal() const | ED4_base | inline |
is_manager() const | ED4_base | inline |
is_multi_name_manager() const | ED4_base | inline |
is_multi_sequence_manager() const | ED4_base | inline |
is_multi_species_manager() const | ED4_base | inline |
is_name_manager() const | ED4_base | inline |
is_orf_terminal() const | ED4_base | inline |
is_pure_text_terminal() const | ED4_base | inline |
is_root_group_manager() const | ED4_base | inline |
is_SAI_manager() const | ED4_base | inline |
is_SAI_terminal() const | ED4_base | inline |
is_sequence_info_terminal() const | ED4_base | inline |
is_sequence_manager() const | ED4_base | inline |
is_sequence_terminal() const | ED4_base | inline |
is_spacer_terminal() const | ED4_base | inline |
is_species_manager() const | ED4_base | inline |
is_species_name_terminal() const | ED4_base | inline |
is_species_seq_manager() const | ED4_base | inline |
is_species_seq_terminal() const | ED4_base | inline |
is_terminal() const | ED4_base | inline |
is_text_terminal() const | ED4_base | inline |
member(ED4_index i) const | ED4_container | inline |
members() const | ED4_container | inline |
members_ok() const | ED4_container | |
move_member(ED4_index old_pos, ED4_index new_pos) | ED4_container | |
move_requested_by_child(ED4_move_info *moveinfo) | ED4_manager | |
move_requested_by_parent(ED4_move_info *mi) | ED4_manager | |
my_table | ED4_abstract_group_manager | protected |
Noncopyable() | Noncopyable | inline |
owner() | ED4_container | inline |
owner() const | ED4_container | inline |
parent | ED4_base | |
rebuild_consensi(ED4_base *start_species, ED4_update_flag update_flag) | ED4_manager | |
refresh_flag_ok() | ED4_manager | |
refresh_requested_by_child() | ED4_manager | |
reinit_char_table() | ED4_group_manager | |
remove_callbacks() OVERRIDE | ED4_manager | virtual |
remove_delete_callback(const ED4_managerCallback &cb) | ED4_manager | inline |
remove_member(ED4_base *member) | ED4_container | |
request_refresh(int clear=1) FINAL_OVERRIDE | ED4_manager | virtual |
request_resize() | ED4_base | inline |
request_resize_of_linked() | ED4_base | |
resize_dynamic() | ED4_base | inline |
resize_requested_by_child() | ED4_manager | inline |
resize_requested_by_link(ED4_base *link) | ED4_base | inline |
resize_requested_children() OVERRIDE | ED4_manager | virtual |
resolve_pointer_to_char_pntr(int *str_len=NULp) const | ED4_base | virtual |
resolve_pointer_to_string_copy(int *str_len=NULp) const | ED4_base | virtual |
route_down_hierarchy(const ED4_route_cb &cb) FINAL_OVERRIDE | ED4_manager | virtual |
search_ID(const char *id) FINAL_OVERRIDE | ED4_manager | virtual |
search_member(ED4_extension *location, ED4_properties prop) | ED4_container | |
search_spec_child_rek(ED4_level level) | ED4_manager | |
search_target_species(ED4_extension *location, ED4_properties prop, ED4_base **found_member, ED4_level return_level) | ED4_container | |
set_both_links(ED4_base *ref) | ED4_base | inline |
set_links(ED4_base *width_ref, ED4_base *height_ref) | ED4_base | |
set_property(ED4_properties prop) | ED4_base | inline |
set_species_pointer(GBDATA *gbd) | ED4_base | inline |
set_update() | ED4_base | inline |
set_width() | ED4_base | |
Show(bool refresh_all, bool is_cleared) OVERRIDE | ED4_manager | virtual |
spec | ED4_base | |
table() | ED4_abstract_group_manager | inline |
table() const | ED4_abstract_group_manager | inline |
toggle_folding() | ED4_group_manager | |
touch_world_cache() | ED4_base | inlinestatic |
unfold() | ED4_group_manager | |
unhide_children() | ED4_manager | |
unlink_from_parent() | ED4_base | |
update_bases(const ED4_base *old_base, const ED4_base *new_base, PosRange range=PosRange::whole()) | ED4_manager | |
update_bases(const char *old_seq, int old_len, const char *new_seq, int new_len, PosRange range=PosRange::whole()) | ED4_manager | |
update_bases(const char *old_seq, int old_len, const ED4_base *new_base, PosRange range=PosRange::whole()) | ED4_manager | |
update_bases(const BaseFrequencies *old_table, const BaseFrequencies *new_table, PosRange range=PosRange::whole()) | ED4_manager | |
update_bases_and_rebuild_consensi(const char *old_seq, int old_len, ED4_base *species, ED4_update_flag update_flag, PosRange range=PosRange::whole()) | ED4_manager | |
update_consensus(ED4_manager *old_parent, ED4_manager *new_parent, ED4_base *sequence) | ED4_manager | |
update_info | ED4_base | |
update_requested_by_child() | ED4_manager | |
update_requested_children() OVERRIDE | ED4_manager | virtual |
update_world_coords_cache() const | ED4_base | inline |
valid_index(ED4_index idx) const | ED4_container | inlineprotected |
width_link | ED4_base | |
~ED4_base() | ED4_base | virtual |
~ED4_container() | ED4_container | virtual |
~ED4_manager() OVERRIDE | ED4_manager | |