ARB: ARBDB/adhashtools.cxx File Reference

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ARBDB

#include "gb_local.h"
#include "arbdbt.h"

Include dependency graph for adhashtools.cxx:

Go to the source code of this file.

Typedefs
typedef GBDATA (	item_iterator )(GBDATA *)

Functions
static void	GBT_add_item_to_hash (GBDATA gb_item, GB_HASH item_hash)

static GB_HASH *	create_item_hash (long size, GBDATA *gb_start, item_iterator getFirst, item_iterator getNext)

GB_HASH *	GBT_create_species_hash_sized (GBDATA *gb_main, long species_count)

GB_HASH *	GBT_create_species_hash (GBDATA *gb_main)

GB_HASH *	GBT_create_marked_species_hash (GBDATA *gb_main)

GB_HASH *	GBT_create_SAI_hash (GBDATA *gb_main)

GB_HASH *	GBT_create_organism_hash (GBDATA *gb_main)

Typedef Documentation

typedef GBDATA*(* item_iterator)(GBDATA *)

Definition at line 19 of file adhashtools.cxx.

Function Documentation

static void GBT_add_item_to_hash	(	GBDATA *	gb_item,
		GB_HASH *	item_hash
	)

static

Definition at line 14 of file adhashtools.cxx.

References GBS_write_hash(), and GBT_get_name().

Referenced by create_item_hash().

static GB_HASH* create_item_hash	(	long	size,
		GBDATA *	gb_start,
		item_iterator	getFirst,
		item_iterator	getNext
	)

static

Definition at line 21 of file adhashtools.cxx.

References GB_IGNORE_CASE, GBS_create_hash(), and GBT_add_item_to_hash().

Referenced by GBT_create_marked_species_hash(), GBT_create_organism_hash(), GBT_create_SAI_hash(), and GBT_create_species_hash_sized().

GB_HASH* GBT_create_species_hash_sized	(	GBDATA *	gb_main,
		long	species_count
	)

Definition at line 32 of file adhashtools.cxx.

References create_item_hash(), GBT_first_species(), and GBT_next_species().

Referenced by GBT_create_species_hash(), and MERGE_sequences_simple().

GB_HASH* GBT_create_species_hash ( GBDATA * gb_main )

Definition at line 36 of file adhashtools.cxx.

References GBT_create_species_hash_sized(), and GBT_get_species_count().

Referenced by find_species_candidates(), GBT_begin_rename_session(), GBT_link_tree(), mark_nontree_cb(), mg_transfer_listed_species(), and NT_alltree_remove_leafs().

GB_HASH* GBT_create_marked_species_hash ( GBDATA * gb_main )

Definition at line 40 of file adhashtools.cxx.

References create_item_hash(), GBT_first_marked_species(), GBT_get_species_count(), and GBT_next_marked_species().

Referenced by mark_nontree_cb(), nt_add(), and nt_extract_configuration().

GB_HASH* GBT_create_SAI_hash ( GBDATA * gb_main )

Definition at line 44 of file adhashtools.cxx.

References create_item_hash(), GBT_first_SAI(), GBT_get_SAI_count(), and GBT_next_SAI().

Referenced by find_SAI_candidates().

GB_HASH* GBT_create_organism_hash ( GBDATA * gb_main )

Definition at line 48 of file adhashtools.cxx.

References create_item_hash(), GEN_first_organism(), GEN_get_organism_count(), and GEN_next_organism().

Referenced by mark_gene_species_of_marked_genes(), mark_genes_of_marked_gene_species(), mg_transfer_listed_species(), and NT_pseudo_species_to_organism().