ED4_text_terminals.cxx File Reference

#include <ed4_extern.hxx>
#include "ed4_class.hxx"
#include "ed4_awars.hxx"
#include "ed4_edit_string.hxx"
#include "ed4_block.hxx"
#include "ed4_nds.hxx"
#include "ed4_visualizeSAI.hxx"
#include "ed4_ProteinViewer.hxx"
#include "ed4_protein_2nd_structure.hxx"
#include "ed4_seq_colors.hxx"
#include <aw_preset.hxx>
#include <aw_awar.hxx>
#include <AW_helix.hxx>
#include <aw_msg.hxx>
#include <aw_root.hxx>
#include <st_window.hxx>
#include <arbdbt.h>
#include <iostream>

Include dependency graph for ED4_text_terminals.cxx:

Go to the source code of this file.

Classes
struct	ShowHelix_cd

Macros
#define	MIN_MARK_BOX_SIZE   8

Functions
void	ensure_buffer (char *&buffer, size_t &buffer_size, size_t needed)
static bool	ED4_show_helix_on_device (AW_device *device, int gc, const char *helixBuffer, size_t helixStart, size_t helixLen, const AW::Position &pos, AW_CL cduser)
static bool	ED4_show_protein_match_on_device (AW_device *device, int gc, const char *pfoldBuffer, size_t pfoldStart, size_t pfoldLen, const AW::Position &pos, AW_CL cl_protstruct)

Macro Definition Documentation

#define MIN_MARK_BOX_SIZE   8

Referenced by ED4_text_terminal::draw().

Function Documentation

void ensure_buffer ( char *&  buffer, size_t &  buffer_size, size_t  needed  )

inline

Definition at line 35 of file ED4_text_terminals.cxx.

References buffer.

static bool ED4_show_helix_on_device ( AW_device *  device, int  gc, const char *  helixBuffer, size_t  helixStart, size_t  helixLen, const AW::Position &  pos, AW_CL  cduser  )

static

Definition at line 117 of file ED4_text_terminals.cxx.

References ED4_ROOT, GB_give_buffer(), ED4_remap::get_max_screen_pos(), BI_pairdef::get_symbol(), ShowHelix_cd::helix, BI_helix::is_pairpos(), min, BI_helix::opposite_position(), ShowHelix_cd::real_sequence_length, ED4_root_group_manager::remap(), ED4_root::root_group_man, ED4_remap::screen_to_sequence(), and AW_device::text().

static bool ED4_show_protein_match_on_device ( AW_device *  device, int  gc, const char *  pfoldBuffer, size_t  pfoldStart, size_t  pfoldLen, const AW::Position &  pos, AW_CL  cl_protstruct  )

static

Calls ED4_pfold_calculate_secstruct_match() for the visible area in the editor to compute the protein secondary structure match and outputs the result to the device.

Parameters

[in]	pfoldBuffer	The protein structure (primary or secondary) that should be compared to cl_protstruct
[in]	cl_protstruct	The reference protein secondary structure SAI

Definition at line 141 of file ED4_text_terminals.cxx.

References aw_message(), ED4_root::aw_root, AW_root::awar(), buffer, ED4_pfold_calculate_secstruct_match(), ED4_ROOT, error(), GB_export_error(), GB_give_buffer(), NULp, PFOLD_AWAR_MATCH_METHOD, AW_awar::read_int(), ED4_root_group_manager::remap(), ED4_root::root_group_man, ED4_remap::screen_to_sequence(), and AW_device::text().