ed4_ProteinViewer.hxx

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// =======================================================================================
//
//    File       : ed4_ProteinViewer.hxx
//    Purpose    : Protein viewer
//    Author     : Yadhu Kumar (yadhu@arb-home.de)
//    web site   : http://www.arb-home.de/
//
//        Copyright Department of Microbiology (Technical University Munich)
//
// =======================================================================================

#ifndef ED4_PROTEINVIEWER_HXX
#define ED4_PROTEINVIEWER_HXX

#ifndef ARBDB_BASE_H
#include <arbdb_base.h>
#endif
#ifndef AW_BASE_HXX
#include <aw_base.hxx>
#endif


// Define Awars
#define AWAR_PROTVIEW                        "protView/"
#define AWAR_PV_DISPLAY_ALL                  AWAR_PROTVIEW "display_all"
#define AWAR_PROTVIEW_FORWARD_STRAND_1       AWAR_PROTVIEW "forward_strand_1"
#define AWAR_PROTVIEW_FORWARD_STRAND_2       AWAR_PROTVIEW "forward_strand_2"
#define AWAR_PROTVIEW_FORWARD_STRAND_3       AWAR_PROTVIEW "forward_strand_3"
#define AWAR_PROTVIEW_COMPLEMENTARY_STRAND_1 AWAR_PROTVIEW "complementary_strand_1"
#define AWAR_PROTVIEW_COMPLEMENTARY_STRAND_2 AWAR_PROTVIEW "complementary_strand_2"
#define AWAR_PROTVIEW_COMPLEMENTARY_STRAND_3 AWAR_PROTVIEW "complementary_strand_3"
#define AWAR_PROTVIEW_DEFINED_FIELDS         AWAR_PROTVIEW "defined_fields"
#define AWAR_PROTVIEW_DISPLAY_OPTIONS        AWAR_PROTVIEW "display_options"

// Awars for different display configurations
#define AWAR_PV_SELECTED         AWAR_PROTVIEW "selected"
#define AWAR_PV_SELECTED_DB      AWAR_PROTVIEW "selected_db"
#define AWAR_PV_SELECTED_FS_1    AWAR_PROTVIEW "selected_fs_1"
#define AWAR_PV_SELECTED_FS_2    AWAR_PROTVIEW "selected_fs_2"
#define AWAR_PV_SELECTED_FS_3    AWAR_PROTVIEW "selected_fs_3"
#define AWAR_PV_SELECTED_CS_1    AWAR_PROTVIEW "selected_cs_1"
#define AWAR_PV_SELECTED_CS_2    AWAR_PROTVIEW "selected_cs_2"
#define AWAR_PV_SELECTED_CS_3    AWAR_PROTVIEW "selected_cs_3"

#define AWAR_PV_MARKED         AWAR_PROTVIEW "marked"
#define AWAR_PV_MARKED_DB      AWAR_PROTVIEW "marked_db"
#define AWAR_PV_MARKED_FS_1    AWAR_PROTVIEW "marked_fs_1"
#define AWAR_PV_MARKED_FS_2    AWAR_PROTVIEW "marked_fs_2"
#define AWAR_PV_MARKED_FS_3    AWAR_PROTVIEW "marked_fs_3"
#define AWAR_PV_MARKED_CS_1    AWAR_PROTVIEW "marked_cs_1"
#define AWAR_PV_MARKED_CS_2    AWAR_PROTVIEW "marked_cs_2"
#define AWAR_PV_MARKED_CS_3    AWAR_PROTVIEW "marked_cs_3"

#define AWAR_PV_CURSOR         AWAR_PROTVIEW "cursor"
#define AWAR_PV_CURSOR_DB      AWAR_PROTVIEW "cursor_db"
#define AWAR_PV_CURSOR_FS_1    AWAR_PROTVIEW "cursor_fs_1"
#define AWAR_PV_CURSOR_FS_2    AWAR_PROTVIEW "cursor_fs_2"
#define AWAR_PV_CURSOR_FS_3    AWAR_PROTVIEW "cursor_fs_3"
#define AWAR_PV_CURSOR_CS_1    AWAR_PROTVIEW "cursor_cs_1"
#define AWAR_PV_CURSOR_CS_2    AWAR_PROTVIEW "cursor_cs_2"
#define AWAR_PV_CURSOR_CS_3    AWAR_PROTVIEW "cursor_cs_3"


// Create Awars For Protein Viewer
void  PV_CreateAwars(AW_root *root, AW_default aw_def);

// Create All Terminals
void PV_CallBackFunction(AW_root *root);

// Create ProteinViewer window
AW_window *ED4_CreateProteinViewer_window(AW_root *aw_root);

// callback function to update sequence change in EDITOR
void PV_SequenceUpdate_CB(GB_CB_TYPE gbtype);

// refresh all orf_terminal's
void PV_RefreshWindow(AW_root *root);

// Creates new orf_terminal's for new species added to the editor ** called from ED4_cursor.cxx **
void PV_AddCorrespondingOrfTerminals(class ED4_species_name_terminal *spNameTerm);

// Creates new orf_terminal's when newly marked species is loaded
void PV_AddOrfTerminalsToLoadedSpecies();

// flags to use in display options
enum {
    PV_AA_CODE = 0,
    PV_AA_NAME,
    PV_AA_BOX
};

#endif