ARB
Functions
ST_quality.cxx File Reference
#include "st_quality.hxx"
#include "st_ml.hxx"
#include "MostLikelySeq.hxx"
#include <ColumnStat.hxx>
#include <BI_helix.hxx>
#include <AP_filter.hxx>
#include <arb_progress.h>
#include <arbdbt.h>
#include <arb_strbuf.h>
#include <cctype>
#include <cmath>
#include <items.h>
Include dependency graph for ST_quality.cxx:

Go to the source code of this file.

Functions

static void st_ml_add_sequence_part_to_stat (ST_ML *st_ml, ColumnStat *, const char *species_name, int seq_len, int bucket_size, GB_HASH *species_to_info_hash, int start, int end)
 
static GB_ERROR st_ml_add_quality_string_to_species (GBDATA *gb_main, const AP_filter *filter, const char *alignment_name, const char *species_name, size_t bucket_size, GB_HASH *species_to_info_hash, st_report_enum report, const char *dest_field)
 
static void destroy_ColumnQualityInfo (long cl_info)
 
GB_ERROR st_ml_check_sequence_quality (GBDATA *gb_main, const char *tree_name, const char *alignment_name, ColumnStat *colstat, const WeightedFilter *weighted_filter, int bucket_size, int marked_only, st_report_enum report, const char *dest_field)
 

Function Documentation

static void st_ml_add_sequence_part_to_stat ( ST_ML st_ml,
ColumnStat ,
const char species_name,
int  seq_len,
int  bucket_size,
GB_HASH species_to_info_hash,
int  start,
int  end 
)
static
static GB_ERROR st_ml_add_quality_string_to_species ( GBDATA gb_main,
const AP_filter filter,
const char alignment_name,
const char species_name,
size_t  bucket_size,
GB_HASH species_to_info_hash,
st_report_enum  report,
const char dest_field 
)
static
static void destroy_ColumnQualityInfo ( long  cl_info)
static

Definition at line 236 of file ST_quality.cxx.

References info.

Referenced by st_ml_check_sequence_quality().

GB_ERROR st_ml_check_sequence_quality ( GBDATA gb_main,
const char tree_name,
const char alignment_name,
ColumnStat colstat,
const WeightedFilter weighted_filter,
int  bucket_size,
int  marked_only,
st_report_enum  report,
const char dest_field 
)